Gene detail

Detailed information of OS493_022377-T1 in Lophelia pertusa

Genomic Location: scaffold_91:1042834...1049134
NR annotation: KAJ7390818.1, Integrator complex subunit 7 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NVH2	Integrator complex subunit 7 OS=Homo sapiens OX=9606 GN=INTS7 PE=1 SV=1
Q1RMS6	Integrator complex subunit 7 OS=Bos taurus OX=9913 GN=INTS7 PE=2 SV=1
Q5ZL91	Integrator complex subunit 7 OS=Gallus gallus OX=9031 GN=INTS7 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003699 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_022377-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR033060 all species →	Family	Integrator complex subunit 7	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13322 all species →	C1ORF73 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016180 all species →	Biological Process	snRNA processing	Interproscan
GO:0032039 all species →	Cellular Component	integrator complex	Interproscan
GO:0034472 all species →	Biological Process	snRNA 3'-end processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_022377-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022377-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

70.9Max TPM

23.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	30.27	45.46
polyp at pH7 6	18	18	29.46	44.23
coral polyp · control treatment	16	16	20.28	53.64
coral polyp · oil and dispersant treatment	16	16	14.91	41.84
coral polyp · oil treatment	16	16	21.11	57.27
coral polyp · dispersant treatment	16	16	11.20	26.09
Polyp	10	10	39.52	70.90

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.46
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.28
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.21
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.90
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.10
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.08
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.98
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.65
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.53
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.38
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.99
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.77
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.49
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.35
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.27
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.27
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.28
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.79
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.23
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.58
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.30
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.54
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.35
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.50
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.75
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.70
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.83
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.50
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.81
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.58
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.37
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.58
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.51
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.16
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.14
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.79
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.64
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.68
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.19
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.09
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.65
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.72
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.51
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.41
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.89
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.46
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.66
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.05
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.72
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.22
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.10
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.42
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.84
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.05
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.50
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.16
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.56
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.27
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.36
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.12
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.01
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.84
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.13
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.51
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.70
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.90
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.86
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.79
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.27
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.61
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.84
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.88
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.51
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.20
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.15
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.53
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.15
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.07
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.77
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.18
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.14
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.10
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.74
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.60
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.09
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.28
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.16
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.11
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.84
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.77
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.38
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.96
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.83
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.87
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.83
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.68
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.30
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.01
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.39
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.64
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	70.90
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	64.81
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	60.66
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	51.03
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	48.52
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	34.58
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	20.88
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	20.82
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	14.58
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.38

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.