Gene detail

Detailed information of OS493_022378-T1 in Lophelia pertusa

Genomic Location: scaffold_91:1049816...1051045
NR annotation: KAJ7390819.1, Integrator complex subunit 7 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8JGR7	Integrator complex subunit 7 OS=Danio rerio OX=7955 GN=ints7 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003699 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_022378-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR033060 all species →	Family	Integrator complex subunit 7	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13322 all species →	C1ORF73 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016180 all species →	Biological Process	snRNA processing	Interproscan
GO:0032039 all species →	Cellular Component	integrator complex	Interproscan
GO:0034472 all species →	Biological Process	snRNA 3'-end processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_022378-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022378-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

40.4Max TPM

9.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	10.24	15.87
polyp at pH7 6	18	16	10.44	20.46
coral polyp · control treatment	16	16	13.03	40.44
coral polyp · oil and dispersant treatment	16	16	9.03	24.19
coral polyp · oil treatment	16	16	11.53	30.94
coral polyp · dispersant treatment	16	15	6.32	11.64
Polyp	10	8	7.57	15.38

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.87
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.78
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.35
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.16
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.27
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.09
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.91
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.67
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.52
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.46
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.29
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.09
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.88
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.18
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.46
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.94
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.92
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.46
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.46
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.98
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.89
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.69
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.17
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.94
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.59
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.34
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.59
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.23
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.16
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.29
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.82
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.59
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.50
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.73
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.44
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.75
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.87
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.63
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.63
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.01
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.62
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.52
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.26
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.77
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.31
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.09
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.48
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.31
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.44
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.42
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.19
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.91
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.28
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.78
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.81
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.49
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.43
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.30
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.20
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.79
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.30
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.29
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.35
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.90
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.31
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.22
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.94
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.76
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.94
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.77
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.18
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.04
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.50
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.42
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.97
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.80
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.12
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.51
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.86
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.97
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.56
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.20
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.64
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.67
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.64
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.09
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.96
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.33
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.60
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.52
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.66
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.31
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.45
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.44
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.82
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.53
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.49
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	15.38
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	15.10
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	12.41
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.16
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.21
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.83
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.17
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.49
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.