Gene detail

Detailed information of OS493_022379-T1 in Lophelia pertusa

Genomic Location: scaffold_91:1051123...1060186
NR annotation: KAJ7390820.1, Integrator complex subunit 7 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZL91	Integrator complex subunit 7 OS=Gallus gallus OX=9031 GN=INTS7 PE=2 SV=1
Q1RMS6	Integrator complex subunit 7 OS=Bos taurus OX=9913 GN=INTS7 PE=2 SV=1
Q9NVH2	Integrator complex subunit 7 OS=Homo sapiens OX=9606 GN=INTS7 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003699 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_022379-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR033060 all species →	Family	Integrator complex subunit 7	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13322 all species →	C1ORF73 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016180 all species →	Biological Process	snRNA processing	Interproscan
GO:0032039 all species →	Cellular Component	integrator complex	Interproscan
GO:0034472 all species →	Biological Process	snRNA 3'-end processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_022379-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022379-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

32.6Max TPM

7.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.35	10.72
polyp at pH7 6	18	17	6.79	9.70
coral polyp · control treatment	16	16	10.26	32.55
coral polyp · oil and dispersant treatment	16	16	7.24	23.20
coral polyp · oil treatment	16	16	8.71	16.77
coral polyp · dispersant treatment	16	16	6.07	12.28
Polyp	10	9	4.72	9.92

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.72
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.16
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.64
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.40
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.29
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.18
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.20
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.17
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.03
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.95
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.77
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.77
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.98
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.85
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.32
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.29
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.42
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.07
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.70
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.46
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.28
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.49
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.43
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.26
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.96
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.54
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.26
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.16
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.34
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.21
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.04
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.66
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.62
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.06
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.68
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.55
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.67
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.08
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.33
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.69
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.45
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.23
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.55
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.13
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.47
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.90
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.45
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.35
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.48
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.88
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.86
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.20
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.38
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.15
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.17
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.56
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.67
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.51
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.82
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.23
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.44
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.42
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.98
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.56
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.27
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.76
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.70
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.77
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.26
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.23
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.22
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.94
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.60
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.77
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.88
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.43
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.14
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.11
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.54
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.83
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.13
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.84
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.63
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.28
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.10
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.33
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.08
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.72
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.14
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.05
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.71
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.35
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.93
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.41
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.12
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.80
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.71
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.53
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.86
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.92
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.36
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.10
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.71
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.76
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.21
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.63
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.62
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.92
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.