Detailed information of OS493_022388-T1 in Lophelia pertusa

Genomic Location: scaffold_91:1104203...1111020
NR annotation: KAJ7390829.1, Metastasis-associated protein mta1 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O94776Metastasis-associated protein MTA2 OS=Homo sapiens OX=9606 GN=MTA2 PE=1 SV=1
Q9R190Metastasis-associated protein MTA2 OS=Mus musculus OX=10090 GN=Mta2 PE=1 SV=1
Q9BTC8Metastasis-associated protein MTA3 OS=Homo sapiens OX=9606 GN=MTA3 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005986 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01448
all species →		ELM2ELM2 domainFamilyInterproscan
PF00096
all species →		zf-C2H2Zinc finger, C2H2 typeDomainInterproscan
PF17226
all species →		MTA_R1MTA R1 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR040138
all species →		FamilyMesoderm induction early response protein/metastasis-associated proteinInterproscan
IPR000949
all species →		DomainELM2 domainInterproscan
IPR013087
all species →		DomainZinc finger C2H2-typeInterproscan
IPR036236
all species →		Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR000679
all species →		DomainZinc finger, GATA-typeInterproscan
IPR035170
all species →		DomainMetastasis-associated protein MTA1, R1 domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10865
all species →		METASTASIS-ASSOCIATED PROTEIN AND MESODERM INDUCTION EARLY RESPONSE PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000122
all species →		Biological Processnegative regulation of transcription by RNA polymerase IIInterproscan
GO:0003713
all species →		Molecular Functiontranscription coactivator activityInterproscan
GO:0003714
all species →		Molecular Functiontranscription corepressor activityInterproscan
GO:0005654
all species →		Cellular ComponentnucleoplasmInterproscan
GO:0016575
all species →		Biological Processobsolete histone deacetylationInterproscan
GO:0016581
all species →		Cellular ComponentNuRD complexInterproscan
GO:0042826
all species →		Molecular Functionhistone deacetylase bindingInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0043565
all species →		Molecular Functionsequence-specific DNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_022388-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_022388-T1 global co-expression network
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