Detailed information of OS493_022538-T1 in Lophelia pertusa

Genomic Location: scaffold_93:1100762...1136505
NR annotation: KAJ7378552.1, hypothetical protein OS493_022538 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O43827Angiopoietin-related protein 7 OS=Homo sapiens OX=9606 GN=ANGPTL7 PE=1 SV=1
O35608Angiopoietin-2 OS=Mus musculus OX=10090 GN=Angpt2 PE=1 SV=2
O35462Angiopoietin-2 OS=Rattus norvegicus OX=10116 GN=Angpt2 PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001264 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00354
all species →
PentaxinPentaxin familyDomainInterproscan
PF06439
all species →
3keto-disac_hyd3-keto-disaccharide hydrolaseDomainInterproscan
PF07534
all species →
TLDTLDDomainInterproscan
PF00754
all species →
F5_F8_type_CF5/8 type C domainDomainInterproscan
PF00147
all species →
Fibrinogen_CFibrinogen beta and gamma chains, C-terminal globular domainDomainInterproscan
PF00629
all species →
MAMMAM domain, meprin/A5/muDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000998
all species →
DomainMAM domainInterproscan
IPR001759
all species →
FamilyPentraxin-relatedInterproscan
IPR008979
all species →
Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR002181
all species →
DomainFibrinogen, alpha/beta/gamma chain, C-terminal globular domainInterproscan
IPR036056
all species →
Homologous_superfamilyFibrinogen-like, C-terminalInterproscan
IPR013320
all species →
Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR000421
all species →
DomainCoagulation factor 5/8 C-terminal domainInterproscan
IPR010496
all species →
Domain3-keto-disaccharide hydrolaseInterproscan
IPR051360
all species →
FamilyNeuronal Pentraxin and RelatedInterproscan
IPR006571
all species →
DomainTLDc domainInterproscan
IPR030476
all species →
Conserved_sitePentaxin, conserved siteInterproscan
IPR020837
all species →
Conserved_siteFibrinogen, conserved siteInterproscan
IPR014716
all species →
Homologous_superfamilyFibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19277
all species →
PENTRAXINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0016787
all species →
Molecular Functionhydrolase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_022538-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022538-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples
95TPM > 0
7Conditions
2.6Max TPM
0.3Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
polyp at pH7 9 18 18 0.58 2.59
polyp at pH7 6 18 17 0.30 0.74
coral polyp · control treatment 16 15 0.25 1.06
coral polyp · oil and dispersant treatment 16 12 0.34 1.85
coral polyp · oil treatment 16 15 0.31 1.04
coral polyp · dispersant treatment 16 13 0.38 1.50
Polyp 10 5 0.07 0.44

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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