Gene detail

Detailed information of OS493_022563-T1 in Lophelia pertusa

Genomic Location: scaffold_93:1383672...1390358
NR annotation: KAJ7378575.1, hypothetical protein OS493_022563 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q13625	Apoptosis-stimulating of p53 protein 2 OS=Homo sapiens OX=9606 GN=TP53BP2 PE=1 SV=2
Q8CG79	Apoptosis-stimulating of p53 protein 2 OS=Mus musculus OX=10090 GN=Tp53bp2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003766 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21712 all species →	ASPP1-2_RA	Apoptosis-stimulating of p53 protein 1/2, RA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047163 all species →	Family	Apoptosis-stimulating of p53 protein 1/2	Interproscan
IPR048945 all species →	Domain	Ras association domain-containing protein 8/10, RA domain	Interproscan
IPR000159 all species →	Domain	Ras-associating domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24131 all species →	APOPTOSIS-STIMULATING OF P53 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0002039 all species →	Molecular Function	p53 binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_022563-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022563-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

4.2Max TPM

1.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	1.82	2.88
polyp at pH7 6	18	15	1.73	3.26
coral polyp · control treatment	16	16	2.20	4.17
coral polyp · oil and dispersant treatment	16	16	1.61	2.39
coral polyp · oil treatment	16	16	2.16	3.84
coral polyp · dispersant treatment	16	16	1.84	3.76
Polyp	10	9	0.92	1.89

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.88
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.75
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.60
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.40
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.29
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.21
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.20
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.17
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.13
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.13
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.99
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.90
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.51
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.20
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.88
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.57
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.26
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.17
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.94
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.66
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.59
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.32
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.14
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.12
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.78
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.77
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.70
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.62
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.54
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.89
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.63
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.17
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.67
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.52
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.33
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.15
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.03
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.42
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.19
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.01
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.72
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.68
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.46
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.39
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.95
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.36
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.10
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.39
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.08
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.08
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.99
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.83
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.75
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.68
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.64
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.59
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.57
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.48
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.42
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.41
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.38
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.84
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.60
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.84
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.50
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.22
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.98
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.91
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.87
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.59
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.51
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.08
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.57
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.51
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.33
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.17
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.12
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.79
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.52
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.76
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.10
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.04
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.96
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.16
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.12
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.90
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.72
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.67
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.51
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.38
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.36
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.20
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.13
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.45
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.05
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.89
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.80
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.29
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	1.23
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.04
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.91
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.52
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.38
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.10
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.