Gene detail

Detailed information of OS493_022617-T1 in Lophelia pertusa

Genomic Location: scaffold_95:122106...131535
NR annotation: KAJ7357807.1, Ribonuclease T2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7M329	Ribonuclease T2 OS=Sus scrofa OX=9823 GN=RNASET2 PE=1 SV=1
O00584	Ribonuclease T2 OS=Homo sapiens OX=9606 GN=RNASET2 PE=1 SV=2
O61887	Ribonuclease T2 protein rnst-2 OS=Caenorhabditis elegans OX=6239 GN=rnst-2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004166 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00445 all species →	Ribonuclease_T2	Ribonuclease T2 family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001568 all species →	Family	Ribonuclease T2-like	Interproscan
IPR033697 all species →	Family	Ribonuclease T2, eukaryotic	Interproscan
IPR033130 all species →	Active_site	Ribonuclease T2, His active site 2	Interproscan
IPR036430 all species →	Homologous_superfamily	Ribonuclease T2-like superfamily	Interproscan
IPR018188 all species →	Active_site	Ribonuclease T2, His active site 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11240 all species →	RIBONUCLEASE T2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0033897 all species →	Molecular Function	ribonuclease T2 activity	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0006401 all species →	Biological Process	RNA catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01166	RNASET2; ribonuclease T2	EC:4.6.1.19	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022617-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

77.4Max TPM

30.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	34.20	51.66
polyp at pH7 6	18	18	34.48	77.41
coral polyp · control treatment	16	16	34.03	66.88
coral polyp · oil and dispersant treatment	16	16	28.51	49.21
coral polyp · oil treatment	16	16	29.02	57.54
coral polyp · dispersant treatment	16	16	24.65	47.28
Polyp	10	10	28.53	47.09

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.66
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.16
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.28
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.14
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.04
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.39
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.65
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.29
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.28
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.89
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.74
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.69
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.47
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.44
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.51
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.97
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.82
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.16
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	77.41
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	71.74
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.93
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.06
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.62
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.11
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.84
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.73
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.74
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.50
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.95
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.27
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.14
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.84
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.96
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.98
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.85
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.88
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.76
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.61
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.07
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.20
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.33
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.86
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.52
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.10
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.78
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.43
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.98
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.42
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.30
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.32
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.21
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.18
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.91
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.31
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.25
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.56
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.83
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.52
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.49
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.00
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.47
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.62
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.92
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.22
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.06
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.63
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.54
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.35
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.38
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.05
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.38
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.79
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.84
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.79
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.37
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.87
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.46
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.34
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.38
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.06
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.43
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.38
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.28
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.84
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.31
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.68
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.17
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.51
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.72
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.86
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.94
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.24
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.37
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.97
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.92
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.15
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.49
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.92
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	47.09
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	42.53
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	34.90
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	31.59
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	31.27
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	30.17
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	25.89
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	18.72
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	17.71
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.38

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.