Gene detail

Detailed information of OS493_022629-T1 in Lophelia pertusa

Genomic Location: scaffold_95:371186...378811
NR annotation: KAJ7357819.1, Eukaryotic translation initiation factor 5A-1 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q22918	Eukaryotic translation initiation factor 5 OS=Caenorhabditis elegans OX=6239 GN=C37C3.2 PE=3 SV=2
P59325	Eukaryotic translation initiation factor 5 OS=Mus musculus OX=10090 GN=Eif5 PE=1 SV=1
Q07205	Eukaryotic translation initiation factor 5 OS=Rattus norvegicus OX=10116 GN=Eif5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008361 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01873 all species →	eIF-5_eIF-2B	Domain found in IF2B/IF5	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045196 all species →	Family	Translation initiation factor IF2/IF5	Interproscan
IPR016189 all species →	Homologous_superfamily	Translation initiation factor IF2/IF5, N-terminal	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR002735 all species →	Domain	Translation initiation factor IF2/IF5 domain	Interproscan
IPR003307 all species →	Domain	W2 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23001 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001731 all species →	Biological Process	formation of translation preinitiation complex	Interproscan
GO:0001732 all species →	Biological Process	formation of cytoplasmic translation initiation complex	Interproscan
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0005092 all species →	Molecular Function	GDP-dissociation inhibitor activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006413 all species →	Biological Process	translational initiation	Interproscan
GO:0071074 all species →	Molecular Function	eukaryotic initiation factor eIF2 binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_022629-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_022629-T1 global co-expression network