Gene detail

Detailed information of OS493_022634-T1 in Lophelia pertusa

Genomic Location: scaffold_95:400601...403044
NR annotation: KAJ7357824.1, hypothetical protein OS493_022634 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NWH0	UPF0696 protein C11orf68 homolog OS=Danio rerio OX=7955 GN=P5436 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009021 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08939 all species →	Bles03	Basophilic leukemia-expressed protein Bles03	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015034 all species →	Family	Basophilic leukemia-expressed protein Bles03-like	Interproscan
IPR023398 all species →	Homologous_superfamily	Translation Initiation factor eIF- 4e-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31977 all species →	UPF0696 PROTEIN C11ORF68	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_022634-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_022634-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022634-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

61.9Max TPM

12.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	21.58	61.87
polyp at pH7 6	18	18	16.46	39.97
coral polyp · control treatment	16	15	7.35	17.21
coral polyp · oil and dispersant treatment	16	15	7.01	22.12
coral polyp · oil treatment	16	16	5.84	16.44
coral polyp · dispersant treatment	16	15	4.07	15.23
Polyp	10	10	25.23	49.88

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	61.87
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	59.39
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.95
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.75
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.94
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.12
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.61
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.29
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.80
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.34
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.61
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.57
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.55
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.34
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.34
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.33
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.81
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.81
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.97
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.83
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.16
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.64
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.88
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.33
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.24
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.17
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.05
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.70
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.91
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.78
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.88
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.20
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.52
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.33
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.12
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.57
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.21
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.33
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.22
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.09
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.52
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.51
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.95
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.16
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.75
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.38
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.19
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.00
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.52
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.24
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.50
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.12
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.68
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.24
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.53
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.40
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.55
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.03
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.39
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.91
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.53
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.46
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.31
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.08
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.50
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.40
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.44
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.93
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.44
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.11
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.09
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.90
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.06
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.75
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.51
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.10
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.81
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.77
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.57
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.13
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.40
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.40
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.23
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.74
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.95
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.01
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.72
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.75
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.58
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.07
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.92
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.77
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.17
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.90
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.89
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.75
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.70
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	49.88
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	48.36
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	46.35
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	24.96
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	23.61
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	22.75
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	20.24
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.03
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.43
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.69

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.