Gene detail

Detailed information of OS493_022664-T1 in Lophelia pertusa

Genomic Location: scaffold_95:971847...1016715
NR annotation: KAJ7357846.1, DnaJ sub C member 13, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_022664-T1

ATGGGTGCGCTGAGATTCAGAGACAAGCTTGGTGTCAAGGTGGTAAAAGCACTGAAAAGAAACGACGATGGGGTGACACACGCTGCAATTGACATGCTCTGTGCATTGATGCAGCCTATGCATGACAACTATGATCTTAGACAAGAACAAATGAACAAGTCGTCACTTCTTTCATCCAGGAAATTCCTTGCTACACTTTTAGACATCTTCACTACCCATGTAAATAGAAGCACAGGGGCTCTTGTTGTTAGCTCACTTCTTGACTTCTTGACATTCGCATTGTGTCCACCATACAGCGAAACAACAGAAGGAACGCAGTTTGACACCTTGTTGGAAATGGTTGCAGATCTTGGGCGTAAAATTTTCAAATTATTTCAGCATCCATCCATGGCAATTGTCAAGGGAGCTGGAATGGTGATGAAAGCCGTGATTGAGGAGGGAGATTCAGAGATTGCATCAAAAATGCAGAATCTTGCTTTGGCTGAAGGAGCCCTGCCTCGTCATCTCCACACAGCAATGTACACTCAGAGTACAGATAGCAGACTACTCACAAACAGGCAGCTCAGTAGACACTTGGTCACACTGTGGGTGACTGGTCATCCCACTGCAATGGGCCTTCTGAAGAGGATCATGCCTGCAGGACTCATGAACTATCTCCACTCTCAAGATAAGGTCCCAGAAGCTGAGATTGACAAGCTCCATGTCCGAGATAATGTGAAACTTGCTGAAGATTCCTCTAAACCCAAGAAGAATCAGTACATGGTTCAGCTGGATGTTGTGTTAACTCACTGGCGGACAAAGATGGGATTGAAATCAAAAGATACAAATCAGAAACCTGTCATTCTAAGAAAGAGAAGACAAAGAATTAAAAGTGATGCAAACTGGGAGTTTTTCTACTACAAATTCAATCAAGATCATTCTATGCCCAATCTCATCTGGAACTACAAGACAAGAGAAGAACTGAGAGAAGCTTTAGAATCAGAGATGAGAGCTTTTGCTGTTGATAAGGATCTTGGTTCAAATCACATCATCTCCTGGAATTACCAAGAATTTGAAGTGCGATACGAGTGTCTTAGCGATGAGATCAAAATCGGTGACTACTACCTCAGGCTGCTTCTTGAAGAAGACGAAGGAAAAACTTTGATCAACAATTCGTTAGAGTTTTTCAACGATCTTTACCACAGATTTCTCCTTACTTCCAAGCCAGCCATGAAAGCAATGTGCTTACAAGCTATGAACAAGGTGTACAGCAAATGTTACGATGACATTGGTGCATTCAATGATACAAGATACATTGTTGGAATGCTTGAGAAGACAACAGACAAGTTGGAGAGAGATCGCCTGATTCTCTTCTTGAATGCGCTTATCAAAAACAAGAAAAATGTCAAAGAGATGATGGACGTCAATGGTATCAGAGTTCTTGTAGATCTTCTAACACTTGCGCATCTTCACACATCAAGGGCTGTGGTACCGCTTCAGAGCAATTTACTGGAGGCATCACCAGAGATGATGCAGCGTGATAGTGAAAAGGAATGGTACTACGGTAACAAGGAGAAAGAACGATTAGGGCCATTTAGCTTCAAGGAGATGAAGGAAATGTCAACTGAAGGAACTCTCCGACCTGAAACTAAGTGTTGGGCGCAGGGTATGGATGGCTGGAGGCCGCTGCATACAATCCCGCAACTCAAGTGGTACCTACTAGCCACTGGCTCCGCTGTCATGAATGAATCAGAGCTGTCTGTCTTGATCTTGAACATGCTGAACAGGATTTGTGAATTTTACCCCAACAGAGATGCTGATGGTGCCATTGTCCGACCTCTTCCAAGAGCAAAACGAATGTTGTCGGAAGCAACATGTTTGCCTCATCTAGTTCAGCTCTTGTTGACCTTTGATCCTATCATTGTGGAGAAAGTGTCTATTCTTCTGCTGAATATGATGGTGGACAATCCTATCCTACCACGATTGTACCTGACTGGAGTTTTTTTCTTCATCATGATGTATACTGGATCAAATGTTCTACCAATTGGAAGATTTCTTCAAGAAGTGCACACAAAACAGGCCTTTAGATCTGAAGAGAGTCATCAGTCAGATTTGTTCCAAAGAAGCATTCTGGGTCCCATTCTGCCAGAGGCCATGGTCTGTTACCTGGAAAATCATGGTCCTGACAAGTTTGCAGAGATTTTCTTAGGAGAATTTGACACACCAGAAGCCATTTGGAACAGTGAAATGAGACGGTTGATGATAGAGAAGATCGCTACACATTTAGCAGACTTCTCACCGAGGCTCCAAAGTAACACTAGAGCTCTGTACCAGTACTGTCCTATTCCAGTCATTTCATATCCACAACTGGAGAATGAGCTGTTCTGTAACATCTTCTACTTGCGACATCTGTGCGACACAGACAAGTTTCCTGATTGGCCAATCAGAGAACCAGTTCGCCTACTTAAGGACATTCTAGAAGCGTGGAAAAAGGAAGTGGAAAAGAAACCTTCAACATTGACTTTAGATGAAGCCTACGACATCCTTAAAGTCAAAAGAGATACTGCAGGAGTTGTCGATGAAGCTAAAGTGAGGAAGGCGTACTTCAGAATGGCGCAGAAATATCACCCTGATAAGAACCCGGAAGGAAGGGACATATTTGAGAAAGTGAACAAGGCATACGAGTTTCTTTGTTCCAAGTCTTCAAGGACAGTACAAGGTCCTGATCCACACAACATTGTACTCATTCTCAAGTCACAGTCCATTCTATTCAAGAGATACCAGGAAGAACTTCAACCATACAAGTACGCAGGTTATCCCATGCTTATCACGACCATCAGACTTGAGACTGTTGATGGAAGTTTGTTCTCAAAGTCTGCTCCTTTGCTGACCGCTGCAAGTGAACTCGCTTATCACACGATCAACTGCTCTGCGCTTAACGCTGAGGAACTACGCAGAGAAAACGGCATCGAGGCGCTACAAGAAGCTTACACTCGCTGCTTAGAAGTAATCACTTCTTCAACTGAACCACACGCAGTACCAGTTCACGTGTGTACTCACATCACAAGATGCTACACAGTTGCAGCCCAGTTTGAAGAGTGTCGCGAGAAGATTACAGAGATGCCGGGAATTATTAAAGATCTGTGCCGCGTCCTTTATCACAGGAATCTCCCAGCACTGTGTTCAGTTGCGGCAGAGTGTGTTAGTGCTTTTTGTGTGGACTTCTGGCTTCAAACTCAACTCTTACAGGCTGGTGTGTTATGGCATTTACTGCTGTTTCTCTTCAACTATGACTACACGTTGGATGAAAGCGGAGTTGAAAAGAGCGCAGAGACTAATCAACAGGAAATCTCCAACAACCTTGCACGTTTGAGTATTGATGCTCTGGCCAGACTTGGTGGATATTTGAGTGATGAAAATTCCACGCCTGAGAACCCAGCCATAAGGAAGTCTCTCTCCTGCATGTTGACTCCTTATATCGCCAAACAACTCAGCAATGATTCACCAAAGAGGTTTATCCTAAAGATGTTGAACAGCAATACAGAGAACCCCTATCTTATCTGGGACAACGCCACACGGATGGAACTGAATGAATTCCTCGAAACTCAGCAGCTCCGAAAGATCAAAACGGGTGAATGTGATACTTCGTTTGGTGCTCGGTTTACCTTCTCCATTTTCAGCGAAGAACTGATTGTGGGCGAGATCTTTGTGCGTATTTACAATGCACAACCTCTGTTCCCACTCGAGGCTCCGCTCAAATTTGCGGCAGATTTGATCGACTTCCTTGGTTCAGAGGCACAGTACCTTCACTCAGTGATGGCAATCACGTCCGCGGAGCTGGATTTCAAGAAAAACCAGAAAAGACTGGATACTAGTGTAATGGCCCTGGAGGCGCTCAGAAACGTCATCAAGAACAACTCAGGAACCGAAGCTCAGTGTATAGGGCATTTTAAGCTGATTTTCTCGTTACTGAGAATGACCAAAGCAACAAAACTTCAGAAATTTGCACTTGAGGTCATCTCAAGCACAACATCAAACAAGAACTGTGTTTCTAGTATCGCAGATTCTGATATTCTGGGCTTTCTGTTCTTAACACTGCACACGCTTCCTTCTGATCGTCTGTTGACCGTTGATACAATGCACGCACTTTGCTCCAACACGAAGATTGTCAAGGAGACGATGCACAAAGGTGGTCTTATCTACCTTCTGGACCTTTATGCCAATGGTACAAACCCAGTGGTCCGTGAGAGGTCGGCTGAGCTGTTTTCTAAGATGATGTCAGATAAACTCATTGGACCCAAAGTCAAGATCATTTTGTCCAAATTCCTGCCCGCCATCTTTATGGACGCCATGAGGGACAATGCTTCAGCAAGTGTGCACATGTTTGAAGCGAACCAGGAGAATCCTGAACTGATATGGAACACTGAAGCCAGGGAAAAAATCTGCACAGTGGTGAAACAGCTCAAAGACAAACATTATGAGGAGCAGAAAGACAACCCTGACACTCAGTGGAAG

Transcript

OS493_022664-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75165	DnaJ homolog subfamily C member 13 OS=Homo sapiens OX=9606 GN=DNAJC13 PE=1 SV=5
F4IVL6	DnaJ homolog subfamily C GRV2 OS=Arabidopsis thaliana OX=3702 GN=GRV2 PE=1 SV=1
Q2QUP1	DnaJ protein ERDJ7 OS=Oryza sativa subsp. japonica OX=39947 GN=ERDJ7 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002268 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14237 all species →	GYF_2	GYF domain 2	Domain	Interproscan
PF19432 all species →	RME-8_N	DNAJ protein RME-8 N-terminal	Domain	Interproscan
PF00226 all species →	DnaJ	DnaJ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035445 all species →	Homologous_superfamily	GYF-like domain superfamily	Interproscan
IPR025640 all species →	Domain	GYF domain 2	Interproscan
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR045802 all species →	Domain	DnaJ homologue subfamily C, GRV2/DNAJC13, N-terminal domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR044978 all species →	Family	DnaJ homologue subfamily C, GRV2/DNAJC13	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR36983 all species →	DNAJ HOMOLOG SUBFAMILY C MEMBER 13	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006898 all species →	Biological Process	receptor-mediated endocytosis	Interproscan
GO:0007032 all species →	Biological Process	endosome organization	Interproscan
GO:0010008 all species →	Cellular Component	endosome membrane	Interproscan
GO:2000641 all species →	Biological Process	regulation of early endosome to late endosome transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_022664-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022664-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

29.8Max TPM

12.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.53	19.23
polyp at pH7 6	18	18	12.18	19.43
coral polyp · control treatment	16	16	16.84	29.85
coral polyp · oil and dispersant treatment	16	16	13.48	21.64
coral polyp · oil treatment	16	16	14.08	23.22
coral polyp · dispersant treatment	16	16	14.26	21.62
Polyp	10	9	4.40	7.92

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.23
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.40
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.47
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.11
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.65
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.36
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.34
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.84
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.58
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.95
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.91
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.22
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.96
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.34
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.57
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.53
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.43
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.68
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.03
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.77
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.93
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.75
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.20
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.91
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.58
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.96
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.94
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.88
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.91
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.97
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.93
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.62
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.36
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.39
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.85
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.67
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.57
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.41
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.86
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.23
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.62
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.63
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.23
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.93
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.07
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.44
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.77
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.37
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.35
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.44
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.64
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.31
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.89
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.13
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.17
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.25
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.85
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.68
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.55
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.49
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.94
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.88
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.75
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.07
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.40
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.68
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.22
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.27
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.88
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.34
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.49
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.41
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.65
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.88
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.47
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.56
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.14
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.29
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.55
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.75
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.35
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.03
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.62
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.37
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.28
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.72
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.17
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.41
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.93
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.89
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.23
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.56
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.03
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.35
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.01
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.52
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.55
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.57
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.92
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.23
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.09
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.71
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.11
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.63
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.86
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.46
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.