Gene detail

Detailed information of OS493_022678-T1 in Lophelia pertusa

Genomic Location: scaffold_95:1287677...1288111
NR annotation: KAJ7357860.1, Molybdenum cofactor synthesis protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5RKZ7	Molybdenum cofactor biosynthesis protein 1 OS=Mus musculus OX=10090 GN=Mocs1 PE=1 SV=2
Q9NZB8	Molybdenum cofactor biosynthesis protein 1 OS=Homo sapiens OX=9606 GN=MOCS1 PE=1 SV=3
Q1JQD7	Molybdenum cofactor biosynthesis protein 1 OS=Bos taurus OX=9913 GN=MOCS1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001795 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01967 all species →	MoaC	MoaC family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023045 all species →	Family	Molybdenum cofactor biosynthesis C	Interproscan
IPR002820 all species →	Domain	Molybdopterin cofactor biosynthesis C (MoaC) domain	Interproscan
IPR050105 all species →	Family	Molybdenum cofactor biosynthesis MoaA/MoaC	Interproscan
IPR047594 all species →	Family	Molybdenum cofactor biosynthesis C, bacteria/eukaryotes	Interproscan
IPR036522 all species →	Homologous_superfamily	Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22960 all species →	MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006777 all species →	Biological Process	Mo-molybdopterin cofactor biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03637	moaC, CNX3; cyclic pyranopterin monophosphate synthase	EC:4.6.1.17	Sulfur relay system	ko04122	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022678-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

7.9Max TPM

2.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	2.41	4.09
polyp at pH7 6	18	17	2.74	5.15
coral polyp · control treatment	16	16	3.42	5.70
coral polyp · oil and dispersant treatment	16	15	1.69	3.81
coral polyp · oil treatment	16	16	3.87	7.93
coral polyp · dispersant treatment	16	16	2.00	3.95
Polyp	10	10	3.83	7.05

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.09
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.03
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.01
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.73
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.54
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.26
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.79
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.49
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.43
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.18
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.14
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.97
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.70
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.63
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.83
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.55
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.15
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.37
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.95
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.93
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.71
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.53
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.49
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.20
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.18
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.07
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.74
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.35
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.22
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.89
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.07
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.82
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.59
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.70
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.47
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.63
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.37
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.21
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.99
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.72
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.41
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.17
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.99
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.70
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.48
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.33
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.22
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.65
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.63
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.81
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.67
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.47
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.28
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.06
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.03
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.91
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.47
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.40
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.38
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.37
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.28
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.14
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.11
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.68
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.93
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.98
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.34
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.22
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.61
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.32
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.25
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.02
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.75
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.66
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.90
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.74
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.19
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.67
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.29
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.12
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.95
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.88
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.67
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.62
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.44
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.18
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.06
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.91
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.81
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.77
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.41
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.39
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.24
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.15
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.32
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.12
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	7.05
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.87
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.65
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.46
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.46
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.83
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.36
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.33
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.17
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	1.09

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.