Gene detail

Detailed information of OS493_022684-T1 in Lophelia pertusa

Genomic Location: scaffold_95:1425652...1429329
NR annotation: KAJ7357866.1, DnaJ sub C member 13 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75165	DnaJ homolog subfamily C member 13 OS=Homo sapiens OX=9606 GN=DNAJC13 PE=1 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002268 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19432 all species →	RME-8_N	DNAJ protein RME-8 N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044978 all species →	Family	DnaJ homologue subfamily C, GRV2/DNAJC13	Interproscan
IPR045802 all species →	Domain	DnaJ homologue subfamily C, GRV2/DNAJC13, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR36983 all species →	DNAJ HOMOLOG SUBFAMILY C MEMBER 13	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006898 all species →	Biological Process	receptor-mediated endocytosis	Interproscan
GO:0007032 all species →	Biological Process	endosome organization	Interproscan
GO:0010008 all species →	Cellular Component	endosome membrane	Interproscan
GO:2000641 all species →	Biological Process	regulation of early endosome to late endosome transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_022684-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022684-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

96TPM > 0

7Conditions

22.4Max TPM

6.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	13	4.34	12.61
polyp at pH7 6	18	12	3.60	10.38
coral polyp · control treatment	16	16	8.99	17.13
coral polyp · oil and dispersant treatment	16	16	8.71	22.39
coral polyp · oil treatment	16	16	6.40	13.76
coral polyp · dispersant treatment	16	15	8.97	15.21
Polyp	10	8	2.01	4.96

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.61
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.25
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.42
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.35
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.41
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.29
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.20
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.12
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.94
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.97
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.89
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.34
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.33
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.38
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.24
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.92
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.86
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.76
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.58
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.59
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.37
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.28
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.16
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.39
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.23
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.13
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.09
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.90
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.61
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.13
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.76
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.77
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.33
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.18
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.49
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.98
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.91
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.90
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.42
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.88
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.39
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.39
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.91
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.52
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.75
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.59
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.37
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.42
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.21
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.78
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.58
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.77
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.61
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.06
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.88
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.25
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.21
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.76
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.73
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.43
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.41
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.93
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.51
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.41
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.75
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.17
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.82
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.65
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.79
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.86
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.83
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.43
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.21
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.96
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.26
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.19
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.53
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.29
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.23
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.87
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.71
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.51
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.65
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.60
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.55
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.61
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.42
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.96
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.61
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.50
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.31
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.09
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.91
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.75
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.