Gene detail

Detailed information of OS493_022726-T1 in Lophelia pertusa

Genomic Location: scaffold_96:745742...746236
NR annotation: KAJ7330205.1, hypothetical protein OS493_022726 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28GD4	ELAV-like protein 2 OS=Xenopus tropicalis OX=8364 GN=elavl2 PE=2 SV=2
Q12926	ELAV-like protein 2 OS=Homo sapiens OX=9606 GN=ELAVL2 PE=1 SV=2
Q5R9Z6	ELAV-like protein 2 OS=Pongo abelii OX=9601 GN=ELAVL2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001587 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10352 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_022726-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022726-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

68.1Max TPM

16.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	17.36	29.28
polyp at pH7 6	18	18	19.56	28.02
coral polyp · control treatment	16	16	20.59	45.50
coral polyp · oil and dispersant treatment	16	16	21.09	68.10
coral polyp · oil treatment	16	16	16.66	21.70
coral polyp · dispersant treatment	16	16	7.39	16.20
Polyp	10	9	9.74	19.67

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.28
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.13
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.08
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.16
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.14
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.08
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.75
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.90
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.94
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.63
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.12
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.05
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.45
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.36
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.69
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.04
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.64
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.06
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.02
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.54
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.26
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.20
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.44
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.51
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.45
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.56
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.26
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.85
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.48
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.03
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.87
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.15
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.94
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.67
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.62
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.24
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.50
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.08
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.12
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.89
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.91
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.91
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.81
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.23
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.42
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.19
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.30
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.62
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.41
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.05
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.25
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.71
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.10
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.56
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.15
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.99
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.30
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.11
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.57
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.61
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.53
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.53
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.08
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.47
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.86
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.81
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.25
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.59
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.70
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.36
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.73
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.64
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.36
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.73
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.47
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.28
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.25
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.39
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.77
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.46
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.68
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.55
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.08
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.10
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.20
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.62
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.93
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.85
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.42
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.71
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.69
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.20
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.17
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.36
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.97
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.67
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.34
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.10
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.10
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.97
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	19.67
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	14.36
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	14.22
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	11.22
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.15
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.31
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.50
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.91
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.