Gene detail

Detailed information of OS493_022750-T1 in Lophelia pertusa

Genomic Location: scaffold_96:946048...947829
NR annotation: KAJ7330227.1, Transaldolase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9W1G0	Probable transaldolase OS=Drosophila melanogaster OX=7227 GN=Taldo PE=2 SV=2
Q2TBL6	Transaldolase OS=Bos taurus OX=9913 GN=TALDO1 PE=2 SV=1
P37837	Transaldolase OS=Homo sapiens OX=9606 GN=TALDO1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006110 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00923 all species →	TAL_FSA	Transaldolase/Fructose-6-phosphate aldolase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001585 all species →	Family	Transaldolase/Fructose-6-phosphate aldolase	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10683 all species →	TRANSALDOLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004801 all species →	Molecular Function	transaldolase activity	Interproscan
GO:0005622 all species →	Cellular Component	intracellular anatomical structure	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0009052 all species →	Biological Process	pentose-phosphate shunt, non-oxidative branch	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_022750-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022750-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

840.5Max TPM

329.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	402.16	500.95
polyp at pH7 6	18	18	437.81	604.93
coral polyp · control treatment	16	16	271.17	355.42
coral polyp · oil and dispersant treatment	16	16	250.87	367.61
coral polyp · oil treatment	16	16	293.64	413.74
coral polyp · dispersant treatment	16	16	215.99	521.70
Polyp	10	10	462.24	840.52

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	500.95
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	480.18
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	449.29
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	428.78
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	418.39
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	409.70
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	406.89
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	397.98
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	397.03
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	397.03
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	396.29
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	394.65
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	376.17
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	374.03
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	370.52
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	365.96
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	338.16
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	336.96
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	604.93
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	593.81
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	482.37
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	460.81
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	460.44
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	457.84
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	443.97
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	441.78
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	441.18
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	423.44
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	421.98
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	420.78
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	408.74
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	377.29
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	363.87
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	362.81
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	360.34
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	354.27
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	355.42
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	344.93
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	338.06
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	335.19
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	317.05
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	299.89
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	296.14
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	284.08
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	265.32
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	263.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	250.87
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	249.21
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	244.50
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	221.60
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	178.25
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	95.19
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	367.61
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	311.21
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	290.47
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	280.27
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	273.39
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	260.90
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	260.65
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	260.09
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	258.99
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	246.87
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	241.79
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	213.60
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	209.07
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	208.07
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	185.66
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	145.33
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	413.74
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	360.59
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	348.13
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	343.74
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	312.40
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	304.01
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	300.42
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	289.30
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	287.37
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	285.10
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	262.96
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	259.57
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	250.20
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	233.81
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	225.32
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	221.63
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	521.70
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	306.73
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	250.67
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	247.78
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	200.08
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	194.56
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	194.28
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	192.32
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	185.01
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	184.34
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	182.90
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	177.82
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	169.78
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	163.82
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	152.66
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	131.45
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	840.52
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	627.18
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	601.82
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	598.97
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	490.69
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	429.34
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	332.02
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	291.66
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	227.51
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	182.69

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.