Gene detail

Detailed information of OS493_022759-T1 in Lophelia pertusa

Genomic Location: scaffold_96:992989...995059
NR annotation: KAJ7330235.1, hypothetical protein OS493_022759 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000635 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_022759-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR036438 all species →	Homologous_superfamily	Insulin-like superfamily	Interproscan
IPR022353 all species →	Conserved_site	Insulin, conserved site	Interproscan

PANTHER

No PANTHER signature was detected for OS493_022759-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for OS493_022759-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_022759-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022759-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

104.7Max TPM

15.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	10.47	18.08
polyp at pH7 6	18	18	11.60	36.78
coral polyp · control treatment	16	16	16.45	27.39
coral polyp · oil and dispersant treatment	16	16	12.98	20.63
coral polyp · oil treatment	16	16	12.08	20.16
coral polyp · dispersant treatment	16	16	15.83	29.81
Polyp	10	10	38.42	104.74

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.08
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.68
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.14
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.50
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.60
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.94
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.23
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.89
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.52
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.49
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.76
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.31
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.83
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.89
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.79
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.81
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.60
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.46
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.78
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.44
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.01
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.67
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.86
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.38
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.16
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.58
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.86
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.19
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.60
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.99
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.14
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.13
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.83
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.62
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.30
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.20
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.39
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.25
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.05
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.01
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.75
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.52
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.43
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.29
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.23
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.23
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.01
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.25
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.76
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.61
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.29
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.19
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.63
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.39
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.86
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.64
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.71
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.25
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.05
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.66
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.47
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.13
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.55
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.17
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.15
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.27
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.81
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.16
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.00
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.01
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.61
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.31
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.57
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.63
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.93
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.70
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.69
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.68
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.45
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.05
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.31
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.81
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.29
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.81
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.67
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.19
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.03
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.31
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.45
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.40
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.42
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.77
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.23
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.19
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.26
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.14
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.10
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.86
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.39
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	104.74
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	78.84
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	50.80
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	34.64
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	28.92
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	25.67
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	23.85
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	19.52
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.79
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	7.43

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.