Gene detail

Detailed information of OS493_022772-T1 in Lophelia pertusa

Genomic Location: scaffold_96:1159603...1164214
NR annotation: KAJ7330248.1, hypothetical protein OS493_022772 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_022772-T1

ATGCAGAAATTAATGTATGAAATTGTCTTTCAGGTCATAGTGACAGCAAACGCGAAAGATTTCCCTCGTCTACGTTATGCATACCGAACATTTACCACACCATATGTAAAGTCAATATTTCCTGCCCGCGGAACAGGAGGAAAAACTGTCATCATTTACGGATCTGGCTTCAGTACAAATACAGATGACATGCACGTTACTATTGGTAACAGCGCCTGCAGTATTGTGACCAGCAGTGAAACACGTTTGATATGCGTATTAGGGAATAGTCCTGCAGGGATATACAGCATCGTACTTCACGTGAAAGGCAAAGGTTTATCCGCCTACCCTACATATAACCCGGTAACATTTCTTTATGAAATATCTCTGGCCAGTGTTTCTCAGAATGACTGCGGGCTTGGAGGAGGGAGAATCGTGTCTGTCAAAGGGCGTGGCTTTCATTCGTCCACCACTGTACTGATCTGCAAAAATGTTTGCCTGACAATTAACAGTTCATTAAACGAGATCTACTGCGAAGTTCCTGCTTATACCGGACAAACAGGTAACACTGATATCGCCTGTTCAGTGATCGTGATTGGAAATGATGAAGTGACGTCATCCTGGTCAGGTTTGTTTATATATCGAGAGTCTCTTACGTCACGTATTACGTCAGTGAGTCCGTCACGTGGTGGAACAGGAGGCGGAGTTCAGCTTACCATAAAAGGAAATGGATTCAGTTCAAACGAAGACGGCAACAAAGTGACCATCGCAGGAATCCCTTGTAAAGTAACTTACTTTTCTCAAACTGAAATCCGCTGCACAACAGGACCGCGGACAGGCACGATACAAACCAAGGTACGAGTGGAGGATGGTAACCAAGGAATTGCAACCCAGGACCACGCGGATTTCCAGTACATCGATGTGTGGTCATCGCGGTACACCTGGGGTTACAAGAGCCCGCCAGGGAAGGGAGACGGTGTAGAAATTTTGAAAGGGCAAACAATTCTTCTTGACGTGGATACTCCTGTTTTCTCTTTTCTAGTCATTAGGGGAGAGTTAATTTTTGACGAAAAGGACCTCACGCTAAATGCTGAGAAGATTCTTGTTGTTGACGGCGGAAAACTACAAGTTGGAACCGAAAAGAAGCCATTTGAACACAAAGCTAAGATTGTACTGCACGGTCACATGCACAATAAACGGCTGCCCATATTTGGAACTAAAGTACTGGCGGTAAGAGAAGGGACTTTGGACCTGCATGGTAAAGTTGTGCCGATCACGTGGACGAACTTAGCTAAGACAGCTGTACCAGGTGATACCCAGCTCCTTCTCAAACATGCCGTTACGTGGGAGATTGGTGATCAAGTCGTACTTGCTTCTACAAGTCGAAGTCAACGTGAAAACGAAGAATTTAACATCACGAGTATCTCTAACGACGGACGAACCATTGGTATCACTCCACCAGTTCAATACGAGCACATTTCTGTTGTTCAAACCATTGCTGGACGGATAATAGAAACGTGCGCTGAGGTTGGACTTTTGACTCGAAATGTCGTCGTTGAAGGATCGGAAAACGACGAATGGAACGAAATCATTCCGGAATGTCCCGAGGGTTTCGACCCGGGTATTTTTGCAGTGCAAACCTGTTTCCAAGGGCGCTATGGTAAGGCAATGGGGAGCGAGCAGTTTGGGTCCCAGATTATGATCAACGCGAGAATGCAGAGTGAGGGACTGGTGACTGGTAGAATATCTTATGTTGAGGTCCGCAAAGCTGGTCAAGCCTTTGGACTGGGTCGCTATCCAATTCATTTTCATCTGAGTGGTGACGTGTCCGGATCTTATGTCCGCGGCTGCGCAATCCATCACACGTTCAACCGTGCCGTTACAGTGCATGGCGTGACTGGGTTACTGGTCGAACACAACGTTGCCTACCATGTCATGGGTCACGCATTCTTCATTGAAGATGGAATAGAAACTGGTAACACAATACAATACAACTTGGGAGTTTTTGTGCAGACTTCCAGCACACTTCTAATAGCTGATGCAACGCCGGCAACCTTCTGGGTGACGAACCCGAATAACACTGTCCGTCACAATGCAGCGGCCGGTGGCAGTCACCATGGATATTGGTACAACCTGCCTACCCACCCTGGGGGACCCTCGTTCACAACATCTGTCTGGCCACAGAAAGCTCCTTTAGGAGAATTTCAGAATAACACGGCTCATTCTTTTGGAAGGTACGGTTTGTGGATCTTCAAAGACTACTACCCGGTAGTACCCGCCAAGTTCCACACACTGCTGGCCTACAACAACCTTAAAGGTTTCGAGGTGACAAGCGGTGGAGCTATCCAGACAATCAACTTCACCGTCATATGCAACAAAGAAGCTGGTGTTGAGTTTACTAATCTACAAGAGGCTCCTTGGGGTGAAAATGGACCTTTATTGAAGGACTCTTTGGTTGTGGGGCATAGCGCCATATGTGCTCCTTCTGCGTGCACCCAAGGAGGGCTCGTTGCACCGCAGTCTTCGCTCCTTACTGTCTCTGGGACCACTTTTGTGAACTTTGATGCGCCGTCATGCGCCGCACTTCGCGGATGCTCATTCTGCAAGCCGAGACAGGGAGGCTTCACAACGAGATTCGAGAAAACACAATTTGTAAACTCATCAAATAAGGCGGCCTTCAAATGGGAACACGAAACCGTGTTTCAGGATCTTGATGGAACATTAACCGGTAGGCGTGCGAACGAGATGTTTATTACGCTCCTTTTAATATTAAAGTTACTGTAA

Transcript

OS493_022772-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q86WI1	Fibrocystin-L OS=Homo sapiens OX=9606 GN=PKHD1L1 PE=1 SV=2
Q80ZA4	Fibrocystin-L OS=Mus musculus OX=10090 GN=Pkhd1l1 PE=1 SV=1
E2RK30	Fibrocystin OS=Canis lupus familiaris OX=9615 GN=PKHD1 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001248 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01833 all species →	TIG	IPT/TIG domain	Domain	Interproscan
PF10162 all species →	G8	G8 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR019316 all species →	Domain	G8 domain	Interproscan
IPR002909 all species →	Domain	IPT domain	Interproscan
IPR052387 all species →	Family	Fibrocystin-related protein	Interproscan
IPR012334 all species →	Homologous_superfamily	Pectin lyase fold	Interproscan
IPR011050 all species →	Homologous_superfamily	Pectin lyase fold/virulence factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46769 all species →	POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_022772-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_022772-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_022772-T1 global co-expression network