Gene detail

Detailed information of OS493_022777-T1 in Lophelia pertusa

Genomic Location: scaffold_96:1325117...1334077
NR annotation: KAJ7330253.1, Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P36876	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Rattus norvegicus OX=10116 GN=Ppp2r2a PE=2 SV=1
P63151	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Homo sapiens OX=9606 GN=PPP2R2A PE=1 SV=1
Q4R7Z4	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Macaca fascicularis OX=9541 GN=PPP2R2A PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006479 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000009 all species →	Family	Protein phosphatase 2A regulatory subunit PR55	Interproscan
IPR018067 all species →	Conserved_site	Protein phosphatase 2A regulatory subunit PR55, conserved site	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11871 all species →	PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000159 all species →	Cellular Component	protein phosphatase type 2A complex	Interproscan
GO:0019888 all species →	Molecular Function	protein phosphatase regulator activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04354	PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022777-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

251.3Max TPM

133.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	121.93	172.95
polyp at pH7 6	18	18	143.15	211.53
coral polyp · control treatment	16	16	147.77	216.67
coral polyp · oil and dispersant treatment	16	16	157.77	216.39
coral polyp · oil treatment	16	16	137.26	219.82
coral polyp · dispersant treatment	16	16	105.48	165.91
Polyp	10	10	115.89	251.32

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	172.95
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	172.79
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	151.56
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	145.68
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	137.89
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	136.32
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	129.44
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	126.79
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	122.33
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	121.76
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	119.48
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	118.71
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	91.65
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	90.87
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	89.33
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	89.24
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	89.10
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	88.82
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	211.53
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	190.39
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	166.38
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	165.69
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	153.14
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	150.28
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	145.12
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	142.93
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	142.63
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	140.99
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	137.40
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	134.87
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	130.21
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	128.23
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	127.20
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	126.09
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	92.32
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	91.22
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	216.67
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	202.27
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	189.84
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	165.51
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	162.77
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	156.11
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	153.65
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	153.51
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	148.31
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	143.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	139.03
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	131.56
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	126.90
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	110.20
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	85.86
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	79.11
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	216.39
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	193.94
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	192.15
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	183.20
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	182.29
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	181.98
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	175.70
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	154.83
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	152.41
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	151.32
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	149.39
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	147.17
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	130.27
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	121.62
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	111.76
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.93
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	219.82
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	175.50
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	168.65
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	167.83
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	165.27
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	160.56
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	159.29
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	148.87
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	129.79
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	128.00
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	124.78
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	111.16
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	105.31
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	99.98
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	88.56
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.80
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	165.91
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	161.40
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	147.92
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	145.18
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	142.80
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	110.01
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	110.00
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	103.25
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	102.05
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	98.13
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	94.24
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	86.31
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	86.11
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	83.08
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.52
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.68
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	251.32
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	157.49
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	155.11
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	108.07
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	94.87
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	92.97
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	85.35
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	82.40
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	82.19
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	49.15

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.