Gene detail

Detailed information of OS493_022785-T1 in Lophelia pertusa

Genomic Location: scaffold_97:170950...172347
NR annotation: KAJ7390707.1, N-chimaerin [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P00522	Tyrosine-protein kinase Abl OS=Drosophila melanogaster OX=7227 GN=Abl PE=1 SV=3
Q4JIM5	Tyrosine-protein kinase ABL2 OS=Mus musculus OX=10090 GN=Abl2 PE=1 SV=1
P10447	Tyrosine-protein kinase transforming protein Abl OS=Feline sarcoma virus (strain Hardy-Zuckerman 2) OX=11776 GN=ABL PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008757 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00130 all species →	C1_1	Phorbol esters/diacylglycerol binding domain (C1 domain)	Domain	Interproscan
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051854 all species →	Family	Rho-type GTPase-activating protein	Interproscan
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan
IPR000980 all species →	Domain	SH2 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46075 all species →	CHIMERIN FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0043087 all species →	Biological Process	regulation of GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_022785-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022785-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

41.3Max TPM

9.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.35	9.40
polyp at pH7 6	18	18	7.63	10.99
coral polyp · control treatment	16	16	14.12	41.35
coral polyp · oil and dispersant treatment	16	16	13.45	30.48
coral polyp · oil treatment	16	16	9.94	16.45
coral polyp · dispersant treatment	16	16	10.07	14.83
Polyp	10	10	5.00	7.78

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.40
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.38
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.19
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.96
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.58
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.66
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.58
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.20
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.06
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.04
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.03
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.79
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.59
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.08
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.88
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.68
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.49
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.74
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.99
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.02
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.97
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.85
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.94
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.90
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.73
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.56
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.18
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.47
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.25
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.96
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.81
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.27
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.43
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.28
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.57
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.11
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.35
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.54
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.28
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.10
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.91
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.89
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.64
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.44
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.81
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.31
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.89
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.27
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.20
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.82
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.87
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.67
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.48
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.24
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.25
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.68
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.66
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.03
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.38
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.86
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.74
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.58
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.53
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.77
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.27
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.20
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.29
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.33
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.45
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.18
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.03
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.28
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.35
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.94
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.58
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.70
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.47
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.47
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.50
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.33
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.02
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.84
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.53
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.42
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.83
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.98
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.39
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.87
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.74
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.65
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.60
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.10
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.05
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.79
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.45
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.41
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.39
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.02
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.65
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.19
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.78
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	7.73
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.51
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.15
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.77
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.09
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.27
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.97
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.71

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.