Gene detail

Detailed information of OS493_022788-T1 in Lophelia pertusa

Genomic Location: scaffold_97:224348...274148
NR annotation: KAJ7390709.1, hypothetical protein OS493_022788 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9W6S5	Allantoicase OS=Xenopus laevis OX=8355 GN=allc PE=2 SV=1
Q640T1	Allantoicase OS=Xenopus tropicalis OX=8364 GN=allc PE=2 SV=1
Q6DGA6	Allantoicase OS=Danio rerio OX=7955 GN=allc PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005473 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03561 all species →	Allantoicase	Allantoicase repeat	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR015908 all species →	Domain	Allantoicase domain	Interproscan
IPR005164 all species →	Family	Allantoicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12045 all species →	ALLANTOICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000256 all species →	Biological Process	allantoin catabolic process	Interproscan
GO:0004037 all species →	Molecular Function	allantoicase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01477	alc, ALLC; allantoicase	EC:3.5.3.4	Purine metabolism	ko00230	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022788-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

32.1Max TPM

18.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	21.49	32.10
polyp at pH7 6	18	18	20.47	29.65
coral polyp · control treatment	16	16	18.86	26.24
coral polyp · oil and dispersant treatment	16	16	14.16	25.07
coral polyp · oil treatment	16	16	18.29	31.63
coral polyp · dispersant treatment	16	16	18.90	30.67
Polyp	10	9	10.58	18.67

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.10
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.17
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.49
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.18
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.38
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.22
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.11
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.13
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.32
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.53
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.05
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.76
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.09
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.60
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.45
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.98
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.79
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.46
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.65
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.51
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.39
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.61
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.78
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.87
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.73
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.66
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.50
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.32
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.01
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.07
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.26
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.21
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.80
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.13
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.31
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.63
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.24
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.47
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.42
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.16
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.99
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.06
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.57
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.93
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.82
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.41
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.17
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.74
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.83
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.71
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.17
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.07
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.07
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.78
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.06
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.08
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.99
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.79
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.94
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.20
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.46
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.42
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.78
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.70
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.67
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.83
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.32
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.47
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.63
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.96
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.91
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.59
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.34
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.02
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.65
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.81
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.68
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.06
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.90
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.85
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.25
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.52
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.50
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.67
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.61
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.35
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.34
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.49
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.91
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.32
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.25
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.04
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.59
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.32
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.71
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.44
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.98
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.81
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.59
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	18.67
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	17.57
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	16.15
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	15.70
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	14.84
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.43
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.28
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.11
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.05
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.