Gene detail

Detailed information of OS493_022789-T1 in Lophelia pertusa

Genomic Location: scaffold_97:275251...314373
NR annotation: KAJ7390710.1, hypothetical protein OS493_022789 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QYF9	Protein NDRG3 OS=Mus musculus OX=10090 GN=Ndrg3 PE=1 SV=1
A7MB28	Protein NDRG3 OS=Bos taurus OX=9913 GN=NDRG3 PE=2 SV=1
Q92597	Protein NDRG1 OS=Homo sapiens OX=9606 GN=NDRG1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002071 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03096 all species →	Ndr	Ndr family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004142 all species →	Family	NDRG	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11034 all species →	N-MYC DOWNSTREAM REGULATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_022789-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022789-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

338.3Max TPM

151.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	195.62	247.78
polyp at pH7 6	18	18	222.82	295.10
coral polyp · control treatment	16	16	129.82	322.62
coral polyp · oil and dispersant treatment	16	16	106.78	302.75
coral polyp · oil treatment	16	16	128.19	223.70
coral polyp · dispersant treatment	16	16	102.66	199.67
Polyp	10	10	167.98	338.32

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	247.78
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	244.72
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	242.68
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	222.59
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	213.98
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	209.76
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	206.97
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	204.56
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	195.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	194.43
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	182.71
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	181.59
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	170.87
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	166.49
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	165.28
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	162.75
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	155.88
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	153.08
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	295.10
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	292.82
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	281.28
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	278.83
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	239.64
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	239.28
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	238.48
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	237.62
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	236.96
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	233.45
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	203.24
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	196.78
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	185.58
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	173.24
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	172.41
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	172.35
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	169.76
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	163.97
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	322.62
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	156.39
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	147.83
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	146.24
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	144.82
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	141.72
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	141.44
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	139.76
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	135.08
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	120.48
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	106.30
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	96.60
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	95.06
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	73.49
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.49
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.86
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	302.75
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	185.87
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	157.88
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	135.08
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	129.15
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	111.22
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	106.49
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	100.77
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	98.55
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	76.64
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.20
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.08
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.50
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.18
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.76
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.32
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	223.70
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	196.14
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	187.18
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	176.61
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	170.24
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	152.47
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	146.78
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	121.37
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	113.16
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	112.92
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	105.57
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	79.41
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	79.14
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	74.37
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.29
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.66
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	199.67
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	180.71
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	161.66
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	137.26
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	136.28
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	119.08
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	105.65
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	90.27
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	79.28
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	77.31
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.47
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.59
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.26
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.24
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.98
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.85
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	338.32
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	253.26
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	217.52
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	178.04
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	166.07
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	153.21
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	136.87
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	95.04
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	77.95
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	63.48

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.