Gene detail

Detailed information of OS493_022857-T1 in Lophelia pertusa

Genomic Location: scaffold_98:244934...248376
NR annotation: KAJ7384227.1, hypothetical protein OS493_022857 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P51175	Protoporphyrinogen oxidase OS=Mus musculus OX=10090 GN=Ppox PE=1 SV=1
P56602	Protoporphyrinogen oxidase OS=Bos taurus OX=9913 GN=PPOX PE=1 SV=2
P50336	Protoporphyrinogen oxidase OS=Homo sapiens OX=9606 GN=PPOX PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005915 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01593 all species →	Amino_oxidase	Flavin containing amine oxidoreductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004572 all species →	Family	Protoporphyrinogen oxidase	Interproscan
IPR002937 all species →	Domain	Amine oxidase	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR050464 all species →	Family	Zeta Carotene Desaturase and Related Oxidoreductases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42923 all species →	PROTOPORPHYRINOGEN OXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004729 all species →	Molecular Function	oxygen-dependent protoporphyrinogen oxidase activity	Interproscan
GO:0006779 all species →	Biological Process	porphyrin-containing compound biosynthetic process	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_022857-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022857-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

9.4Max TPM

4.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.04	7.40
polyp at pH7 6	18	17	4.90	8.37
coral polyp · control treatment	16	16	5.38	9.04
coral polyp · oil and dispersant treatment	16	16	4.06	8.51
coral polyp · oil treatment	16	16	5.97	9.44
coral polyp · dispersant treatment	16	16	3.90	8.86
Polyp	10	9	4.58	8.55

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.40
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.01
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.97
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.42
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.45
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.44
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.16
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.98
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.93
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.60
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.41
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.36
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.32
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.19
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.99
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.86
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.73
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.43
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.37
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.85
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.14
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.76
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.47
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.66
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.41
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.37
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.37
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.94
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.37
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.75
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.46
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.45
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.38
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.23
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.21
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.04
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.22
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.47
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.37
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.50
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.50
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.47
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.85
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.38
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.76
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.65
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.58
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.17
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.94
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.80
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.31
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.51
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.13
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.73
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.63
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.35
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.29
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.52
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.14
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.05
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.96
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.86
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.83
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.35
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.14
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.87
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.62
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.44
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.44
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.42
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.10
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.67
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.44
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.27
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.62
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.59
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.54
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.14
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.05
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.38
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.34
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.13
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.93
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.86
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.69
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.51
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.16
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.16
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.67
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.00
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.45
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.38
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.97
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.75
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.17
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.09
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.94
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.45
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.22
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.55
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.74
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.65
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.52
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.52
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.15
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.17
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.53
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.96
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.