Gene detail

Detailed information of OS493_022868-T1 in Lophelia pertusa

Genomic Location: scaffold_98:333107...334459
NR annotation: KAJ7384237.1, Sortilin- receptor [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O88307	Sortilin-related receptor OS=Mus musculus OX=10090 GN=Sorl1 PE=1 SV=3
P0DSP1	Sortilin-related receptor OS=Rattus norvegicus OX=10116 GN=Sorl1 PE=1 SV=1
Q92673	Sortilin-related receptor OS=Homo sapiens OX=9606 GN=SORL1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000636 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15901 all species →	Sortilin_C	Sortilin, neurotensin receptor 3, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031777 all species →	Domain	Sortilin, C-terminal	Interproscan
IPR050310 all species →	Family	VPS10-related sortilin family receptors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12106 all species →	SORTILIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006892 all species →	Biological Process	post-Golgi vesicle-mediated transport	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_022868-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022868-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

79TPM > 0

7Conditions

41.7Max TPM

6.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	10	2.29	8.48
polyp at pH7 6	18	6	2.08	9.97
coral polyp · control treatment	16	14	8.41	37.13
coral polyp · oil and dispersant treatment	16	15	10.91	34.28
coral polyp · oil treatment	16	15	5.35	20.51
coral polyp · dispersant treatment	16	15	13.89	41.67
Polyp	10	4	0.18	0.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.48
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.85
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.81
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.68
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.16
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.91
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.33
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.46
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.33
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.25
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.97
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.97
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.11
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.39
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.54
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.42
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.13
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.29
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.44
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.59
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.80
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.36
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.31
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.47
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.85
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.33
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.03
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.65
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.54
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.83
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.28
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.23
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.65
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.80
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.27
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.03
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.73
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.00
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.58
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.69
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.02
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.50
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.22
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.20
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.38
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.51
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.07
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.17
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.00
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.28
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.09
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.62
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.22
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.49
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.59
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.49
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.28
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.05
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.04
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.66
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.67
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.99
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.93
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.85
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.89
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.05
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.70
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.18
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.78
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.62
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.23
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.85
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.59
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.18
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.73
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.65
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.52
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.51
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.14
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.