Gene detail

Detailed information of OS493_022875-T1 in Lophelia pertusa

Genomic Location: scaffold_98:500693...506354
NR annotation: KAJ7384244.1, Golgi transport complex subunit 6 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3SZI7	Conserved oligomeric Golgi complex subunit 6 OS=Bos taurus OX=9913 GN=COG6 PE=2 SV=1
Q9Y2V7	Conserved oligomeric Golgi complex subunit 6 OS=Homo sapiens OX=9606 GN=COG6 PE=1 SV=2
Q68FP9	Conserved oligomeric Golgi complex subunit 6 OS=Rattus norvegicus OX=10116 GN=Cog6 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004781 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20653 all species →	COG6_C	Conserved Oligomeric Golgi complex subunit 6, C-terminal	Repeat	Interproscan
PF06419 all species →	COG6_N	Conserved oligomeric complex COG6, N-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010490 all species →	Family	Conserved oligomeric Golgi complex subunit 6	Interproscan
IPR048369 all species →	Domain	Conserved Oligomeric Golgi complex subunit 6, C-terminal	Interproscan
IPR048368 all species →	Domain	Conserved oligomeric complex COG6, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21506 all species →	COMPONENT OF OLIGOMERIC GOLGI COMPLEX 6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006891 all species →	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0017119 all species →	Cellular Component	Golgi transport complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15611	PBX4; pre-B-cell leukemia transcription factor 4	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_022875-T1 global co-expression network