Gene detail

Detailed information of OS493_022882-T1 in Lophelia pertusa

Genomic Location: scaffold_98:565071...574662
NR annotation: KAJ7384250.1, Sortilin- receptor [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O88307	Sortilin-related receptor OS=Mus musculus OX=10090 GN=Sorl1 PE=1 SV=3
P0DSP1	Sortilin-related receptor OS=Rattus norvegicus OX=10116 GN=Sorl1 PE=1 SV=1
Q92673	Sortilin-related receptor OS=Homo sapiens OX=9606 GN=SORL1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000636 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15902 all species →	Sortilin-Vps10	Sortilin, neurotensin receptor 3,	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050310 all species →	Family	VPS10-related sortilin family receptors	Interproscan
IPR031778 all species →	Domain	Sortilin, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12106 all species →	SORTILIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006892 all species →	Biological Process	post-Golgi vesicle-mediated transport	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_022882-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022882-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

81TPM > 0

7Conditions

20.5Max TPM

4.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	14	6.23	16.14
polyp at pH7 6	18	10	5.27	14.48
coral polyp · control treatment	16	11	5.05	20.47
coral polyp · oil and dispersant treatment	16	12	4.46	11.29
coral polyp · oil treatment	16	12	4.33	12.33
coral polyp · dispersant treatment	16	14	4.61	13.68
Polyp	10	8	1.50	5.67

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.14
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.08
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.53
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.57
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.02
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.43
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.78
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.78
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.87
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.25
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.24
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.10
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.82
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.53
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.48
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.89
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.86
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.50
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.99
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.80
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.54
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.05
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.52
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.20
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.47
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.23
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.13
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.71
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.93
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.25
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.38
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.06
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.79
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.09
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.75
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.29
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.14
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.20
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.45
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.51
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.46
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.31
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.82
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.62
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.34
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.17
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.09
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.33
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.50
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.92
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.31
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.33
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.19
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.12
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.47
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.87
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.15
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.13
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.68
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.56
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.24
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.93
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.47
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.25
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.32
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.30
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.85
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.65
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.64
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.56
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.29
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.04
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.67
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.29
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.19
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.60
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.25
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.11
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.65
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.28
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.