Gene detail

Detailed information of OS493_022911-T1 in Lophelia pertusa

Genomic Location: scaffold_98:923358...938610
NR annotation: KAJ7384277.1, hypothetical protein OS493_022911 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08E20	S-formylglutathione hydrolase OS=Bos taurus OX=9913 GN=ESD PE=2 SV=1
P10768	S-formylglutathione hydrolase OS=Homo sapiens OX=9606 GN=ESD PE=1 SV=2
Q9GJT2	S-formylglutathione hydrolase OS=Sus scrofa OX=9823 GN=ESD PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005509 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00756 all species →	Esterase	Putative esterase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR000801 all species →	Family	Esterase-like	Interproscan
IPR014186 all species →	Family	S-formylglutathione hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10061 all species →	S-FORMYLGLUTATHIONE HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0018738 all species →	Molecular Function	S-formylglutathione hydrolase activity	Interproscan
GO:0046294 all species →	Biological Process	formaldehyde catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_022911-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022911-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

40.4Max TPM

18.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	26.08	32.49
polyp at pH7 6	18	18	24.20	40.45
coral polyp · control treatment	16	16	16.85	28.32
coral polyp · oil and dispersant treatment	16	16	13.57	31.04
coral polyp · oil treatment	16	16	16.45	28.08
coral polyp · dispersant treatment	16	16	11.73	20.19
Polyp	10	10	18.15	25.41

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.49
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.26
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.24
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.29
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.54
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.93
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.73
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.53
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.11
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.58
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.31
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.10
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.58
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.35
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.99
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.89
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.51
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.45
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.64
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.26
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.05
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.43
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.64
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.78
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.47
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.77
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.01
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.73
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.90
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.58
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.54
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.38
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.19
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.66
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.13
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.32
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.44
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.16
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.82
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.50
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.66
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.63
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.82
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.68
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.79
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.10
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.13
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.05
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.87
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.13
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.55
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.04
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.48
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.40
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.21
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.13
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.58
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.61
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.39
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.01
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.58
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.44
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.11
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.12
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.92
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.47
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.56
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.08
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.72
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.02
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.96
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.85
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.34
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.82
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.72
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.42
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.34
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.07
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.55
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.25
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.02
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.03
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.19
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.96
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.16
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.51
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.43
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.34
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.62
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.38
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.21
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.70
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.81
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.74
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.39
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.23
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.19
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.87
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	25.41
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	23.57
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	23.18
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	21.85
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	19.55
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	18.98
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	15.86
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	14.44
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	12.04
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.62

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.