Gene detail

Detailed information of OS493_022914-T1 in Lophelia pertusa

Genomic Location: scaffold_98:947490...954074
NR annotation: KAJ7384280.1, hypothetical protein OS493_022914 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P33277	GTPase-activating protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=gap1 PE=4 SV=1
O00899	Ras GTPase-activating-like protein gapA OS=Dictyostelium discoideum OX=44689 GN=gapA PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002529 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_022914-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14149 all species →	RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005938 all species →	Cellular Component	cell cortex	Interproscan
GO:0046580 all species →	Biological Process	negative regulation of Ras protein signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_022914-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022914-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

41.1Max TPM

7.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	2.33	5.25
polyp at pH7 6	18	15	2.81	6.67
coral polyp · control treatment	16	16	9.38	30.74
coral polyp · oil and dispersant treatment	16	16	15.92	33.21
coral polyp · oil treatment	16	16	6.97	22.95
coral polyp · dispersant treatment	16	16	12.99	41.15
Polyp	10	9	2.61	6.47

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.25
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.39
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.99
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.65
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.52
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.27
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.26
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.20
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.13
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.95
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.94
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.93
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.91
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.89
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.85
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.48
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.13
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.08
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.67
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.52
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.84
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.74
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.62
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.44
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.33
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.30
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.02
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.95
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.85
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.85
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.24
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.11
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.13
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.74
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.79
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.44
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.84
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.79
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.67
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.87
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.76
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.36
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.89
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.04
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.16
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.81
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.35
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.73
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.86
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.21
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.62
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.35
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.65
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.38
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.21
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.12
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.83
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.51
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.18
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.01
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.80
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.95
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.91
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.79
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.23
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.95
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.66
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.78
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.27
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.85
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.92
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.60
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.41
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.29
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.13
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.30
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.52
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.03
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.66
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.76
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.38
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.15
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.28
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.05
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.71
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.70
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.29
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.42
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.80
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.40
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.17
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.04
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.99
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.69
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.65
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.33
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.17
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.47
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.45
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.31
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.01
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.97
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.22
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.46
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.79
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.41
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.