Gene detail

Detailed information of OS493_022919-T1 in Lophelia pertusa

Genomic Location: scaffold_98:1021143...1075479
NR annotation: KAJ7384285.1, GRIP and coiled-coil domain-containing protein 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_022919-T1

ATGGCTGCAAATATTAATGACACTGATCCACTTGGCGTGACAAATGGTGTGAAAAAGGAAGCCCCACCAAGCTCAAGCTCAAGCCCAATGAAATCACAAGGAAAATCACAGCTTGAGTCACTTACTAAAGAAGATCTTGTAAAATATGTCAAGAAGCAGGTTGTTCTGTTAAAGCAAAGCAAAGCAAAGTGTGAAGAAATATCCTCACAACTAGAAGGGGAAAAGAATGAAGTTCAAAGACTGGAAAATGAAAAGAGAGAGTGGTTATCAAGAGGGGTGCATGCAGAGTTTGAGAAGAAAGACAAGATTTTAAAGAAAAATAAAGAGTTAAAAATGGCTGCCGAACTTGGGAGAAAGATGCTTGAGGAAAATGATGGTTTACGAGGAATGTACAGTGAACTGGAGCATGAACATGTGAAAACAGTTAAAGAGCTTGAAGAGGAGTTATCAACTGTTGTGATGGAGAGAGATGGACTTCAGAAATCACTGAGAGTTTTGCAGGAAGAATATCAAACTGTTGCCAAGGAGGCGAAGGAATACAAAAATGCTTTGGAATTACAAGCGCTCCAAGAAGACAAAGCTCAAGAACAACTACAGATTGACAATCAATACTTGCTTCAGAAGATTCAAGAACTCCAGCTAGAGAGAGAACAGACTCAAGAAACCCTAATGCAATTTGAAAAAGAGAATCATGATCTCTTAGACAACTGCAAGGAACTGGAAGTTAAGATTGAATCGCTAAACAATCAAGTATCAGAGAGTGATCAGCAATCTACAACAAGTGAGAATTCTGAAACCCTGGCATTGACAAATGAGCTTCAAGCCAAATTGGCAAAGCTGATGGTAGAAAAGGAAGAGCTCATCAAGGCTGTGGAGGCATCCAGTGATTCTCACAATGAGACAGCAGAACAAGATATCCAAGATCTTAAAGATCAAGTAGAGAAGCTGCTTGTGGAAAGGAATGAACTTGAAAGCAGATTTGATTGCCTTATGCAGGAGGGAGGGGCTGATGTAGGAAGCGAGGGTACAAGTCAAATAAGGGAGCATTTTTTGATGGAAAATGAGGAGCTTAAAGACAATAATGAGGATATGGAGGAAAATTTGGAGACCGCTGTTAAGGAATGTGAGGAGAATAAGTTTTATGTCAAGGAGCTTGGTGATCAACTCAACAAACTGAAGGCAGAAAAGGAAAAGGCTCTAAAATCTCTAAAAGCACTTAAAGTTAGTCACGATAGGCTGAAAAACAAGTTGAGAGAAATGAGCTCCTCGCAGGAAGATTTGAGCAAGATGTCAGTTAAGGAATTGAGAAAGACGCTTTCAGTTGTCAAGATTGAGAAAGAAGACGTTGAAACAGCTTTAAATGACAGCAGAAAAGAGTTACAAGCACTGGAAGAGAAAAACAAGGAAACAGTGAATGAATATGAGAAGCTGTTTGTGGAGAATGAAGTTTTAAAAGACTCAGTTACTGGTCTTCAGCAGCAGTATAGAAGTGTTGCAGAAAGCAATGAGGCTGCAAAGAAACAGCTGGAATGTGTCGTGTTTGAGAAAGACGAGCTCAGTCTCTCACTCAAGTCTATCCAGGAGGAACATAACAAGATAGTGCAAGAAAATGAGGGGCTAAAAGGTCAACTTGAAGATCTGACTTCAGCTATGGAGAGTACTAAGAACAATTCAGAACAACCAAAACAGCAGGAGGAGGATAGGCAGACAAAGCTCATCAAACAAATAAAAGATTTGTCAGCAGAGAAGAAGAAACTGGTGAAATCTCTTACTGAGTTGAGAGAGAAGTTTAATGCAACTGTTATGGAGAATACCAAGAGAGATAATCTTATTCAAGACTTAAAGGAAGAAGTTAAAGTTAATTTCCTTGCAAACCAGGAACTCAAGAAGCAAGTTGAGACAGCCGTTGAACGAGAGAAAAAACTGAAATCAGAGCTGAAGAAAAATGAGAAGGATCTAAAAACAGAACTGGATAAAAATAAAGATGGCCAAAAACAACTACAGTTTGCACAGAGCGAGAGAAACAAAGTGCAGAGTGCATACGATGCACTGAAGAAACAGTGGGAAGAGCATTTCACCACATGTGGTAAAGGTAACAAGGAAAACCCAAAGAAGACGGAGAAACTTGTCGCTGAAAGGGAGAAGTTACAAAAGGCATTGCAATCTGCTAAAGAGGAGCACAGTGAAATATCACAGCAAAACCAAAATCTGCAAGAACAATTGAAGAGCTTGTCGCAGGAGAGAGATGAACTTAAGATGAACATGGAGTCGTTCGAAGACCAACTGAAGGCTTCAGCAGAGGAAAAGGCTGCTATGGACAAGGAGTTCAGTGACACGAAACAAGAGTTTCAGTCAGTTAAGAGTCATTTGACGGAGCTGAAGGAGAATCTACAAATTGAACAGAAGGAAAAAGAGGAATTAAGCAGCAGACTGAATAATACCACCCAAGAAAAGAATGATTTGCTCAACCAAATCTCGAGTTTGGAGGAGAGCGTTTCATCCGCTGACAGTGAAAGAAAGACATGGCAAGAGAAAATAAGTACGCTTACGGAGGGAAAAGCTGAACTTGAAAACAAAATGGCGTCAGTCACGGAGAGTTTAGAAACAGAAAAACAGGAATTAAACAACAGGCTGGAGAGATCCTCCCAGGAAAATAATGATTTGCTCAGCGATGTGTCAACATTGGAGGAGAGAAATTCATCAGCTAAAAAGGAAAGCAAAGCGTTACAAGAGAGATTGAATTTACTTACAAAGGAAAAAACTGGAATTGAAAATGAAATGGCATTGTTAAGGGAGTCTTTACAAAATTCGGAAAAGGAAAAGCAGGAACTTTGGGATCAGATTAAGAGTAACTCTTCAGAGGATAGCAAGCTGCAGGGAATGGTCGAAAGCTTGGAAAAAATGCTTCATGATTCGGAGAATAAATATCAAGAACAAAGTAGAGCCCTGCAGGAAAGCAACCAGAATCATGAACATCTGCAAAGTAGGATTCAATCTTTGGAGGAAATGACGAGAAACGGAGAAAGCGTTAACAAGGAGCTAGAGCAGTGCTTATTGCAAAAAGAAGAAGAGTTGAGATTAACACAAAGCCAGGCTGCTGAGATGGAAGAAGATCTCAACACAGTATTACAAGAAAAACAGGATCTGAATATGAAGTTAACAGCATTCCATGAACAGGCGACCACTGTTGAAAGTAACATTCAAACTTCAGAAGAGAAAGCACAATCATATGAACAAAAATATAAGGATTTAACAGAAAAACTTTCGACTTCCTTGGAGGAAAAATTATCGCTGGAAGAGAGAATCAAGGCATCGGAAGAGAGACTGAATAACTCTGAAGTAAACCACAAGGATTTGAAGAACCAATTGGCAGCGCTGTCAGAGGAAAACATCTCCCTTGAGAGTCACGCTAAGAAGTTACGAAGTGCGTTACAAAGTGCCGAGGAAAATCAAGAGGATTTGCGCCAGCAGCTGAGTTTTGTCCAGAATGATAAAGAACAACTACAGCAATCGTTGTCTATTACAGAGGAACAGCATACGACACTTAACTCCAAGCTAGAGGATTCTCGGCGAGCAATTCAAGAATTGGAGAACAAGACTAAACAACTCGCAAAAGATCTGAAGGAGGCGAACGAGGAAAAATCTCATCAAGAGGCGGAGATCGAAGAGCTGTTCAGAACACAGGATGATTTACAAGCTAAATACAACGACGAATTGAAAGAGAGAAAGGAATTGAATGATTATATTGAGCAACTTCACGAGGAGTTGGAAGATGTACACGTGCAGTTCGACTCGCTGTCCAAGGAACACAAGAATTTATCTGGAAGACTAGCTGAAATCCAGTCGGGTCAACTGTCGACAGAATCGCAACATTATCAACAACTTTCTGATCTGCAGGAAATCAACAGCGACTTGCAGGAGGATAATCACAGCTTAAAGGAGACTGTAAATACACTGAACACGTCGTTTGAGGAGAAAGGCAGTGAACTTACAGAGATATTGAGTGGGCTTGAGGAAAGCAAACAAGAAGTGGAAAAACTGAACGCTGAACTTAATTCACTGAAAGAATCGCACGCGTTAAAAGATAACGAACTAATTGAATTGAGAACGTGTGTAAACGATTTTAATCTGGAAAAAGAAACTATGAGTCAGTCTGTGGGACAACTGAGTGAAAATGTACAAGGGTTGAGCAGTGAGAAGGAAGCGCTGGCTTCGACCATCGAGAATTTGAACAAAAGTTTAGAAGAGAAGGACAATCGAATAACGGAGCTGTTAGCGAATCTTGATCAGCAGAAGAATGAATTGGAGGCAGTTAAGGAGAGTTTCAACGGTGTTTCGGAGAAGTTGGAAAGCAAAGAAGAAGAATTTAAGAAAGCTGTGAAGGCTGTGAAACAATTGAAGCAGAATTTAATCAAATCTCAAGAGAAAGTGAAAACATTGAGCGCGAAGCTCGACGAAAAAGAACAGGAAGGAAGACAATCTACTGAGGCATTCACATCACAAGAGGAGGAATTCACAGCTGTTAAGTCCAACGTTGAAAGACTAAACGAAAGTGTTCAGGCAAAGGATGTCGAAATTGAAGGTTGTAAAGAGAGACTGAGCCAAAAGGATAACGAGTTGGCGAATTTTCAGGAGGTTGTGAACAGTTTGAATGCGAAAGTCGAAGAAACCTCAATGGCGTTAGCGACTTCTAAGGAATTAAACAACAAACTTTCCGAACAAGTGCAAAGTTTGAACTCGCACGTGGAAACTCTTGAATTGAGTTTACAAGAAAAAGGGAGGGATAGTAACGATGTTGAAGTGAAATTTCAAGAGCATTTACAAGTGGTAGAGGATTTGAGGTCGAAAATACGTTCGCTGGAAGGTTTGATTAACACGCACAACGAGGAGAGGGAAGCCATCGACAAGACTTGTCAACAACGCGACGAAACGATTGTCGCGCTAAAGCAAGATTTAGAGCTGCAAGCGAAAAATATAGCGGATGCTAACGAACAAGCTGCTTCAAAGGAAGACGAATTAAAGACTTTACATGAATTTAACGAGAGGTTGAATCAAGCCGTCTTTGAAAGGGAAGAAGAAAATGAGAGACTTAAATTAGAAAGGAAAGAATTTTGCAACAAGGTCGATTCTCTCAGTGAAACTGTTGCTTCTAAGGAAGAAGTGGTCCGCAAATTGAAGAAAAAGACAGAGGCATTTGAACAGCAGACTGCGTCTATAGATAAAGATTTGTTACTGAAAGAAGAGGAAATGCAGAAGTTGAAATCGCTAAACGAGGAAAAAGATCACTGTATCGCGGACGTGGAATCAAAACTCGAAGCTCAGCAACAAGAAATAACCAAGTTAGGAAATGAAATTTCCGATCAGAAGCAAACGATTGGCGACAAAGAGGAACAACTTCATAAATATAAGACAACAGGAGAGGAGAAGACGGAGAAAATCTCGTCCCTAGAAGCGAGTGTACAATCGTTGAACGCAGCCCTCGAAGCCAAAGTTATGGAGGTAAAAAATCTTCAGGTTCAACTAGGCGAGAAGCAAACGGAAGTCGAGTCTGCGCAGAATGCCATGTCGAGCCTGAGTAGCGAGATGGAAACCGGTGCTCAGGAAACTTACCAGTTTACAAACAGGATAGAAGAACTACAGAAAGAATTGGACACCATCATGGAGGCTCGAGATGTACTGGGACGTGAGAATAAGGAGAAGGATGACAAGATGAACAAGTTTAAACAAGTGGCGGTTAAGTCGAAGAAAGAACTGGAGAATAACAGGAAACAGTGGAAGGATGAAAAAGGCGAACTGATTTCCACAATACAAGAGTTGAAAGAAGATGCCCAGACCTTGAACGCGAAGTTTGTTGAACAACAAGACGAGACGCTGAAACATACCGATGAATATCAGGAGCTGCAAACCCAGCTGACCAGACTGCAGGAGGAACTGGAAGCAGAGAAGTCAAAATCGGCCAGCTCATCCGATAACGTGACACAAGTTGCAGAAGAACTGGCAAATGTCCGCCAAGAAGCGGAAAAATTGTCAGCGGAAAATGAAAGTTTGAACAAGAATTATGAATCTCTGCTAAAGGTTGTGGAGAGAGAGCGAACCGATTCTAAAGCAGAGCAAGAGAAGCTGAACGCGCAAATCCAGGAGTTTCTAAAAGAAGTTGAGTTGCTGAGAACAGAAAGCAGCAAGAATAAAAAAGACAATTCTGATCTTGAAAAGGAACTTACTGGAACGATAAAAGACCTGGAACAAGCCAACAAGGAGAAATCGGAGCTGTTGACTAAACTGGAGAACACTGACGAAGATTTAACAGAAGAGCGAAGACGACACGAGGAGACAAGAAATCAACTGGAAAAGACTAAACGACTGCTGGAGGCTGCAGAAAAGGAAGCGAATCAAAGCAGTTTGATGAGCTTGGAAATGGAGGATTATCAGAAATCCCTGGAGGCGCTGCAAACCAAACTATCCGAGAAAGAAAAGTCATTACACGATTCACAGGACGAGGTGACCAGGGTGGATAAGAGAGCAGACGACTTCAAGACACAGATCGAAATGATAGACAGTCAACGACAGCAAACCGAAGAAAGAGCGCTGAAAATGAAATCCGTGCTGGTGAAAACAAAGAAAGAACTCGCGGAAGCCAAGAAGAAGATAATGGAACGAGAACTGAGTGAGTCTCAGTTGAAAGGACAGTTAGAATCCTCCACTCAACAGGCTGAGGAGTACAAGGTCGAGGTCTCTTCTCTAACCGCCGAAAGCCAAAGTTACCAGCAACAACTTCGTTCATCCACAGAGAGCAACAAACGCAGTGTAGAGAGCCTGGAAATGAAACTGTCCAAAATGAAAGCAGAATGGGAAAGCTCTAAACTGGCCCATGAAGCCACGCGGGCTGAGTTTGAAAGCTACAAGACTCGTGTTCACAGTGTCCTCAAACAACAGAAGTCCAACAAACCCGCTCCTCAGCAACCGGAACTGGAGAAATCTGAAAGAACGCGTTTGGAGCAAGGGATTGAACAGATGAAGAGTAAGCTGCAGGAGACCAATGAGAAATGCAGTATGCTTCAAAGCGAGTATGATGAGTTGGAGAGCGAGCACGAGAGACTAACCGCTCGTCATAGCAAGCTGATACAAGATATCGATAACAAGGAAGCTCACTGGAGAGACAGGTTTGAGCGTATCAAGTCCGAACGAACCACTACAAACGAAGAACATCTGGAAGCAATAAAACACATGACGCTTCAGAACGAGTCTGTAGCGACCACATTCAAGGAAAAACTTGACGTCATTGAAGAAGAACACCGGGCTCAGTTGGAAAGACTGCAGCAGAAACTTACAGATGCTGAAAACAAGTTTGGCAGGTTACAACAGGAAAGACAACAACAACAACAGGCCCAGAAGTCCATAGTCAGGTCTCGCTCTCCACCAGACCTCGCGCTGCAAAGGGCAACAGAGGAGCGTCGGCCTGGGGAGGGCATGGATCAGAGTGAATTAGCTGAAACAGACGTCGGTCCAAGGCTGAATTCTCCTCCCAGTACACCAGTAACACCGTCCATTGCCTCGACTCTTGAGAAAATTCTCTCCCCGACATCTCCGAAAAGTCCAATGTCTCCAGGAATGGACGAAGCGTTACGAGGTCCTCCTTTGGACGAAAACCTTCTGCTCTCGAACATTGCAACCGCCAACAAAAAAGTTGAACATCTAACGGAGTTGCTGCGCGAAAGTGAGGCGAATTCTATGAGGCTGTCAGAACAGGCCAAAGTGTTGAAGGACGAGATAAGAAGAATGGAAAGAAACCAGGAGCGAGAGAAAGAGTCCGCCAACCTTGAGTACTTAAAGAACGTCATATTACAGTTCCTGAAGTGTCGTCCGAGTGAACGAGAACACTTGGTTCCAGTCCTCACTACCATGTTGAAACTCAGTCAGGACGAGAAGGACCTGGTAACTCAACAAGCGCGAGGAGCTGAAAGTGAAGAAACTGAAGATGGCGGAGGATGGAGCAGTTATGTGTACCGATGGACGTCTTTTACGTAG

Transcript

OS493_022919-T1

Protein

OS493_022919-T1

MAANINDTDPLGVTNGVKKEAPPSSSSSPMKSQGKSQLESLTKEDLVKYVKKQVVLLKQSKAKCEEISSQLEGEKNEVQRLENEKREWLSRGVHAEFEKKDKILKKNKELKMAAELGRKMLEENDGLRGMYSELEHEHVKTVKELEEELSTVVMERDGLQKSLRVLQEEYQTVAKEAKEYKNALELQALQEDKAQEQLQIDNQYLLQKIQELQLEREQTQETLMQFEKENHDLLDNCKELEVKIESLNNQVSESDQQSTTSENSETLALTNELQAKLAKLMVEKEELIKAVEASSDSHNETAEQDIQDLKDQVEKLLVERNELESRFDCLMQEGGADVGSEGTSQIREHFLMENEELKDNNEDMEENLETAVKECEENKFYVKELGDQLNKLKAEKEKALKSLKALKVSHDRLKNKLREMSSSQEDLSKMSVKELRKTLSVVKIEKEDVETALNDSRKELQALEEKNKETVNEYEKLFVENEVLKDSVTGLQQQYRSVAESNEAAKKQLECVVFEKDELSLSLKSIQEEHNKIVQENEGLKGQLEDLTSAMESTKNNSEQPKQQEEDRQTKLIKQIKDLSAEKKKLVKSLTELREKFNATVMENTKRDNLIQDLKEEVKVNFLANQELKKQVETAVEREKKLKSELKKNEKDLKTELDKNKDGQKQLQFAQSERNKVQSAYDALKKQWEEHFTTCGKGNKENPKKTEKLVAEREKLQKALQSAKEEHSEISQQNQNLQEQLKSLSQERDELKMNMESFEDQLKASAEEKAAMDKEFSDTKQEFQSVKSHLTELKENLQIEQKEKEELSSRLNNTTQEKNDLLNQISSLEESVSSADSERKTWQEKISTLTEGKAELENKMASVTESLETEKQELNNRLERSSQENNDLLSDVSTLEERNSSAKKESKALQERLNLLTKEKTGIENEMALLRESLQNSEKEKQELWDQIKSNSSEDSKLQGMVESLEKMLHDSENKYQEQSRALQESNQNHEHLQSRIQSLEEMTRNGESVNKELEQCLLQKEEELRLTQSQAAEMEEDLNTVLQEKQDLNMKLTAFHEQATTVESNIQTSEEKAQSYEQKYKDLTEKLSTSLEEKLSLEERIKASEERLNNSEVNHKDLKNQLAALSEENISLESHAKKLRSALQSAEENQEDLRQQLSFVQNDKEQLQQSLSITEEQHTTLNSKLEDSRRAIQELENKTKQLAKDLKEANEEKSHQEAEIEELFRTQDDLQAKYNDELKERKELNDYIEQLHEELEDVHVQFDSLSKEHKNLSGRLAEIQSGQLSTESQHYQQLSDLQEINSDLQEDNHSLKETVNTLNTSFEEKGSELTEILSGLEESKQEVEKLNAELNSLKESHALKDNELIELRTCVNDFNLEKETMSQSVGQLSENVQGLSSEKEALASTIENLNKSLEEKDNRITELLANLDQQKNELEAVKESFNGVSEKLESKEEEFKKAVKAVKQLKQNLIKSQEKVKTLSAKLDEKEQEGRQSTEAFTSQEEEFTAVKSNVERLNESVQAKDVEIEGCKERLSQKDNELANFQEVVNSLNAKVEETSMALATSKELNNKLSEQVQSLNSHVETLELSLQEKGRDSNDVEVKFQEHLQVVEDLRSKIRSLEGLINTHNEEREAIDKTCQQRDETIVALKQDLELQAKNIADANEQAASKEDELKTLHEFNERLNQAVFEREEENERLKLERKEFCNKVDSLSETVASKEEVVRKLKKKTEAFEQQTASIDKDLLLKEEEMQKLKSLNEEKDHCIADVESKLEAQQQEITKLGNEISDQKQTIGDKEEQLHKYKTTGEEKTEKISSLEASVQSLNAALEAKVMEVKNLQVQLGEKQTEVESAQNAMSSLSSEMETGAQETYQFTNRIEELQKELDTIMEARDVLGRENKEKDDKMNKFKQVAVKSKKELENNRKQWKDEKGELISTIQELKEDAQTLNAKFVEQQDETLKHTDEYQELQTQLTRLQEELEAEKSKSASSSDNVTQVAEELANVRQEAEKLSAENESLNKNYESLLKVVERERTDSKAEQEKLNAQIQEFLKEVELLRTESSKNKKDNSDLEKELTGTIKDLEQANKEKSELLTKLENTDEDLTEERRRHEETRNQLEKTKRLLEAAEKEANQSSLMSLEMEDYQKSLEALQTKLSEKEKSLHDSQDEVTRVDKRADDFKTQIEMIDSQRQQTEERALKMKSVLVKTKKELAEAKKKIMERELSESQLKGQLESSTQQAEEYKVEVSSLTAESQSYQQQLRSSTESNKRSVESLEMKLSKMKAEWESSKLAHEATRAEFESYKTRVHSVLKQQKSNKPAPQQPELEKSERTRLEQGIEQMKSKLQETNEKCSMLQSEYDELESEHERLTARHSKLIQDIDNKEAHWRDRFERIKSERTTTNEEHLEAIKHMTLQNESVATTFKEKLDVIEEEHRAQLERLQQKLTDAENKFGRLQQERQQQQQAQKSIVRSRSPPDLALQRATEERRPGEGMDQSELAETDVGPRLNSPPSTPVTPSIASTLEKILSPTSPKSPMSPGMDEALRGPPLDENLLLSNIATANKKVEHLTELLRESEANSMRLSEQAKVLKDEIRRMERNQEREKESANLEYLKNVILQFLKCRPSEREHLVPVLTTMLKLSQDEKDLVTQQARGAESEETEDGGGWSSYVYRWTSFT

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IWJ2	GRIP and coiled-coil domain-containing protein 2 OS=Homo sapiens OX=9606 GN=GCC2 PE=1 SV=4
Q8CHG3	GRIP and coiled-coil domain-containing protein 2 OS=Mus musculus OX=10090 GN=Gcc2 PE=1 SV=3
D3ZZL9	GRIP and coiled-coil domain-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Gcc2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001843 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01465 all species →	GRIP	GRIP domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000237 all species →	Domain	GRIP domain	Interproscan
IPR051841 all species →	Family	Microtubule and Golgi organization protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18902 all species →	NUCLEAR MITOTIC APPARATUS PROTEIN 1-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_022919-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022919-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

30.3Max TPM

13.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	13.38	19.51
polyp at pH7 6	18	18	12.41	15.52
coral polyp · control treatment	16	16	17.40	30.29
coral polyp · oil and dispersant treatment	16	16	15.85	29.42
coral polyp · oil treatment	16	16	14.95	21.32
coral polyp · dispersant treatment	16	16	13.10	20.85
Polyp	10	10	8.38	15.75

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.51
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.01
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.75
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.04
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.40
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.28
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.02
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.97
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.31
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.90
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.88
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.60
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.33
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.75
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.24
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.31
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.53
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.97
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.52
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.65
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.64
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.46
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.45
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.01
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.28
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.53
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.41
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.15
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.13
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.90
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.28
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.25
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.25
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.63
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.54
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.40
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.29
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.30
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.84
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.16
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.11
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.16
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.55
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.13
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.57
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.36
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.60
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.51
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.25
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.99
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.64
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.93
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.42
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.67
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.05
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.57
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.61
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.56
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.30
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.87
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.67
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.15
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.87
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.77
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.55
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.09
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.92
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.50
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.32
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.03
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.41
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.35
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.89
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.77
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.36
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.08
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.88
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.57
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.11
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.92
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.83
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.68
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.15
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.80
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.85
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.44
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.82
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.96
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.84
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.00
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.67
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.56
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.44
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.59
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.51
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.41
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.25
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.93
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.56
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.68
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	15.75
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	13.91
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.27
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.66
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.79
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.05
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.66
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.15
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.78
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	1.76

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.