Gene detail

Detailed information of OS493_022998-T1 in Lophelia pertusa

Genomic Location: scaffold_99:635803...643119
NR annotation: KAJ7378463.1, Cytochrome b5 reductase 4 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28CZ9	Cytochrome b5 reductase 4 OS=Xenopus tropicalis OX=8364 GN=cyb5r4 PE=2 SV=1
Q3TDX8	Cytochrome b5 reductase 4 OS=Mus musculus OX=10090 GN=Cyb5r4 PE=2 SV=3
Q68EJ0	Cytochrome b5 reductase 4 OS=Rattus norvegicus OX=10116 GN=Cyb5r4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004279 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00173 all species →	Cyt-b5	Cytochrome b5-like Heme/Steroid binding domain	Domain	Interproscan
PF04969 all species →	CS	CS domain	Domain	Interproscan
PF00970 all species →	FAD_binding_6	Oxidoreductase FAD-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017938 all species →	Homologous_superfamily	Riboflavin synthase-like beta-barrel	Interproscan
IPR001199 all species →	Domain	Cytochrome b5-like heme/steroid binding domain	Interproscan
IPR036400 all species →	Homologous_superfamily	Cytochrome b5-like heme/steroid binding domain superfamily	Interproscan
IPR051872 all species →	Family	Cytochrome b5/Flavoprotein Reductase	Interproscan
IPR008978 all species →	Homologous_superfamily	HSP20-like chaperone	Interproscan
IPR007052 all species →	Domain	CS domain	Interproscan
IPR018506 all species →	Binding_site	Cytochrome b5, heme-binding site	Interproscan
IPR008333 all species →	Domain	Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46237 all species →	CYTOCHROME B5 REDUCTASE 4 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004128 all species →	Molecular Function	cytochrome-b5 reductase activity, acting on NAD(P)H	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_022998-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_022998-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

24.8Max TPM

11.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.66	17.78
polyp at pH7 6	18	18	12.23	18.26
coral polyp · control treatment	16	16	12.20	17.67
coral polyp · oil and dispersant treatment	16	16	9.58	18.82
coral polyp · oil treatment	16	16	12.95	24.76
coral polyp · dispersant treatment	16	16	8.54	15.36
Polyp	10	9	8.44	16.50

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.78
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.82
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.75
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.75
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.28
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.40
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.33
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.98
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.89
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.81
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.72
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.07
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.78
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.65
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.60
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.12
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.71
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.44
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.26
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.15
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.48
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.20
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.91
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.53
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.09
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.32
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.28
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.14
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.80
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.72
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.39
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.97
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.14
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.03
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.58
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.19
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.67
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.33
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.10
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.07
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.94
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.22
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.72
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.71
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.17
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.35
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.92
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.78
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.55
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.13
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.96
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.55
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.82
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.86
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.35
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.31
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.59
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.88
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.53
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.40
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.00
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.42
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.04
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.02
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.58
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.16
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.12
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.25
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.76
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.50
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.29
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.69
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.86
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.97
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.46
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.55
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.71
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.51
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.00
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.99
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.65
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.01
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.28
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.36
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.04
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.52
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.28
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.91
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.21
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.07
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.83
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.61
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.51
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.38
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.18
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.13
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.11
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.79
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.75
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	16.50
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.29
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.85
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.69
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.03
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.24
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.39
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.78
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.66
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.