Gene detail

Detailed information of OS493_023013-T1 in Lophelia pertusa

Genomic Location: scaffold_99:843750...853353
NR annotation: KAJ7378478.1, E3 ubiquitin-protein ligase E3D [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008387 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09814 all species →	HECT_2	HECT-like Ubiquitin-conjugating enzyme (E2)-binding	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019193 all species →	Family	Ubiquitin-conjugating enzyme E2-binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31531 all species →	E3 UBIQUITIN-PROTEIN LIGASE E3D FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006513 all species →	Biological Process	protein monoubiquitination	Interproscan
GO:0030332 all species →	Molecular Function	cyclin binding	Interproscan
GO:0031624 all species →	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0051865 all species →	Biological Process	protein autoubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20803	UBE3D; ubiquitin-protein ligase E3 D	EC:2.3.2.26	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_023013-T1 global co-expression network