Gene detail

Detailed information of OS493_023069-T1 in Lophelia pertusa

Genomic Location: scaffold_100:216953...225821
NR annotation: KAJ7371733.1, Nucleoside diphosphate-linked moiety X motif 6 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CH40	Nucleoside diphosphate-linked moiety X motif 6 OS=Mus musculus OX=10090 GN=Nudt6 PE=1 SV=1
P53370	Nucleoside diphosphate-linked moiety X motif 6 OS=Homo sapiens OX=9606 GN=NUDT6 PE=1 SV=2
P70563	Nucleoside diphosphate-linked moiety X motif 6 OS=Rattus norvegicus OX=10116 GN=Nudt6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005576 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18290 all species →	Nudix_hydro	Nudix hydrolase domain	Domain	Interproscan
PF00293 all species →	NUDIX	NUDIX domain	Domain	Interproscan
PF00411 all species →	Ribosomal_S11	Ribosomal protein S11	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000086 all species →	Domain	NUDIX hydrolase domain	Interproscan
IPR020084 all species →	Conserved_site	NUDIX hydrolase, conserved site	Interproscan
IPR001971 all species →	Family	Small ribosomal subunit protein uS11	Interproscan
IPR036967 all species →	Homologous_superfamily	Small ribosomal subunit protein uS11 superfamily	Interproscan
IPR020476 all species →	Domain	NUDIX hydrolase	Interproscan
IPR040618 all species →	Domain	Pre-nudix hydrolase domain	Interproscan
IPR015797 all species →	Homologous_superfamily	NUDIX hydrolase-like domain superfamily	Interproscan
IPR003293 all species →	Family	Nudix hydrolase 6-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13994 all species →	NUDIX HYDROLASE RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0035529 all species →	Molecular Function	NADH pyrophosphatase activity	Interproscan
GO:0047631 all species →	Molecular Function	ADP-ribose diphosphatase activity	Interproscan
GO:0051287 all species →	Molecular Function	NAD binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023069-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_023069-T1 global co-expression network