Gene detail

Detailed information of OS493_023077-T1 in Lophelia pertusa

Genomic Location: scaffold_100:267280...269455
NR annotation: KAJ7371740.1, TPR and ankyrin repeat-containing protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BV79	TPR and ankyrin repeat-containing protein 1 OS=Mus musculus OX=10090 GN=Trank1 PE=2 SV=3
O15050	TPR and ankyrin repeat-containing protein 1 OS=Homo sapiens OX=9606 GN=TRANK1 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000890 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_023077-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR039904 all species →	Family	TPR and ankyrin repeat-containing protein 1	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21529 all species →	MAMMARY TURMOR VIRUS RECEPTOR HOMOLOG 1, 2 MTVR1, 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023077-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023077-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

15.8Max TPM

5.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	5.40	11.95
polyp at pH7 6	18	17	4.06	8.55
coral polyp · control treatment	16	16	6.73	15.81
coral polyp · oil and dispersant treatment	16	16	4.94	15.50
coral polyp · oil treatment	16	16	5.92	14.83
coral polyp · dispersant treatment	16	16	5.35	15.25
Polyp	10	10	3.50	6.96

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.95
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.97
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.59
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.51
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.48
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.25
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.78
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.33
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.90
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.62
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.93
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.30
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.60
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.53
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.99
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.88
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.62
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.55
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.48
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.04
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.91
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.33
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.90
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.82
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.70
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.97
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.01
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.58
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.18
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.21
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.19
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.94
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.94
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.39
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.81
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.15
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.23
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.87
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.95
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.54
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.41
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.20
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.81
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.58
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.18
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.67
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.46
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.30
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.06
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.39
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.50
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.78
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.94
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.82
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.08
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.77
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.74
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.72
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.10
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.09
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.90
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.79
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.72
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.63
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.41
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.98
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.83
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.73
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.29
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.47
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.93
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.34
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.88
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.83
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.44
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.82
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.28
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.28
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.06
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.90
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.89
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.72
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.25
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.45
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.24
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.55
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.72
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.40
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.83
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.71
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.83
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.30
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.96
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.78
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.70
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.97
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.67
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.28
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.96
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.39
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.53
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.98
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	3.45
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.91
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.09
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.92
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.55
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.20

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.