Gene detail

Detailed information of OS493_023084-T1 in Lophelia pertusa

Genomic Location: scaffold_100:294698...299165
NR annotation: KAJ7371746.1, Exocyst complex component 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NV70	Exocyst complex component 1 OS=Homo sapiens OX=9606 GN=EXOC1 PE=1 SV=4
Q8R3S6	Exocyst complex component 1 OS=Mus musculus OX=10090 GN=Exoc1 PE=1 SV=4
Q9VVG4	Exocyst complex component 1 OS=Drosophila melanogaster OX=7227 GN=Sec3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002304 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20654 all species →	Sec3_C-term	Exocyst complex component Sec3, C-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048628 all species →	Domain	Exocyst complex component Sec3, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16092 all species →	SEC3/SYNTAXIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000145 all species →	Cellular Component	exocyst	Interproscan
GO:0005546 all species →	Molecular Function	phosphatidylinositol-4,5-bisphosphate binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0006893 all species →	Biological Process	Golgi to plasma membrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023084-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023084-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

94.8Max TPM

34.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	41.29	57.59
polyp at pH7 6	18	18	40.50	79.05
coral polyp · control treatment	16	16	31.46	55.76
coral polyp · oil and dispersant treatment	16	16	22.80	39.19
coral polyp · oil treatment	16	16	39.62	54.19
coral polyp · dispersant treatment	16	16	18.40	37.76
Polyp	10	10	49.15	94.84

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.59
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.80
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.31
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.29
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.65
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.60
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.90
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.24
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.96
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.58
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.56
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.39
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.56
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.22
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.71
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.27
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.77
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.80
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	79.05
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.76
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.07
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.11
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.29
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.21
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.18
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.37
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.99
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.40
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.23
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.77
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.08
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.04
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.53
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.67
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.22
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.11
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.76
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.17
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.11
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.83
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.25
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.25
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.93
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.97
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.80
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.07
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.44
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.27
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.97
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.68
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.85
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.06
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.19
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.23
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.57
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.92
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.13
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.46
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.00
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.90
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.75
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.93
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.11
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.52
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.54
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.53
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.18
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.78
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.19
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.92
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.26
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.87
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.24
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.59
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.72
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.65
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.38
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.14
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.98
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.20
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.78
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.67
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.11
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.27
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.76
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.26
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.20
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.62
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.45
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.11
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.38
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.16
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.03
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.35
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.60
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.79
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.74
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.19
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.75
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.03
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	94.84
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	80.31
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	68.46
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	59.44
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	52.81
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	52.68
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	28.45
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	24.64
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	16.31
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	13.57

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.