Gene detail

Detailed information of OS493_023085-T1 in Lophelia pertusa

Genomic Location: scaffold_100:299886...311067
NR annotation: KAJ7371747.1, Exocyst complex component 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R3S6	Exocyst complex component 1 OS=Mus musculus OX=10090 GN=Exoc1 PE=1 SV=4
Q9NV70	Exocyst complex component 1 OS=Homo sapiens OX=9606 GN=EXOC1 PE=1 SV=4
Q9VVG4	Exocyst complex component 1 OS=Drosophila melanogaster OX=7227 GN=Sec3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002314 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15277 all species →	Sec3-PIP2_bind	Exocyst complex component SEC3 N-terminal PIP2 binding PH	Domain	Interproscan
PF09763 all species →	Sec3_CC	Exocyst complex component Sec3, coiled-coil	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028258 all species →	Domain	Exocyst complex component Sec3, PIP2-binding N-terminal domain	Interproscan
IPR019160 all species →	Domain	Exocyst complex component Sec3, coiled-coil	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16092 all species →	SEC3/SYNTAXIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000145 all species →	Cellular Component	exocyst	Interproscan
GO:0005546 all species →	Molecular Function	phosphatidylinositol-4,5-bisphosphate binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0006893 all species →	Biological Process	Golgi to plasma membrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023085-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023085-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

34.1Max TPM

15.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	15.58	30.01
polyp at pH7 6	18	18	14.90	25.51
coral polyp · control treatment	16	16	17.60	33.03
coral polyp · oil and dispersant treatment	16	16	13.41	27.89
coral polyp · oil treatment	16	16	20.08	34.10
coral polyp · dispersant treatment	16	16	13.36	32.98
Polyp	10	10	8.72	18.11

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.01
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.89
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.98
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.03
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.78
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.91
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.75
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.46
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.85
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.69
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.30
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.26
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.20
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.95
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.79
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.69
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.47
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.38
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.51
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.69
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.83
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.78
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.27
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.86
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.43
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.91
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.05
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.85
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.13
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.87
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.58
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.07
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.47
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.84
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.56
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.54
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.03
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.32
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.21
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.05
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.91
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.62
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.89
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.14
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.62
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.20
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.39
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.75
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.83
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.61
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.42
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.65
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.89
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.69
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.29
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.01
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.81
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.98
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.96
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.70
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.32
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.49
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.44
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.34
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.28
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.73
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.08
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.56
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.10
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.80
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.38
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.27
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.51
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.59
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.40
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.90
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.20
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.61
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.74
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.13
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.59
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.02
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.18
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.81
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.98
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.04
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.99
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.85
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.84
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.14
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.56
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.56
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.15
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.75
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.24
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.99
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.77
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.44
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.27
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.19
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	18.11
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	17.58
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.32
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.54
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.32
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.82
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.22
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.05
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.15
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.05

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.