Gene detail

Detailed information of OS493_023117-T1 in Lophelia pertusa

Genomic Location: scaffold_100:598224...603063
NR annotation: KAJ7371779.1, hypothetical protein OS493_023117 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O43772	Mitochondrial carnitine/acylcarnitine carrier protein OS=Homo sapiens OX=9606 GN=SLC25A20 PE=1 SV=1
P97521	Mitochondrial carnitine/acylcarnitine carrier protein OS=Rattus norvegicus OX=10116 GN=Slc25a20 PE=1 SV=1
Q8HXY2	Mitochondrial carnitine/acylcarnitine carrier protein OS=Macaca fascicularis OX=9541 GN=SLC25A20 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000470 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00153 all species →	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018108 all species →	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR050567 all species →	Family	Mitochondrial Carrier	Interproscan
IPR023395 all species →	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45624 all species →	MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005740 all species →	Cellular Component	mitochondrial envelope	Interproscan
GO:0006810 all species →	Biological Process	transport	Interproscan
GO:0006839 all species →	Biological Process	mitochondrial transport	Interproscan
GO:0015227 all species →	Molecular Function	acyl carnitine transmembrane transporter activity	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:1902603 all species →	Biological Process	carnitine transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15109	SLC25A20_29, CACT, CACL, CRC1; solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023117-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

245.8Max TPM

53.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	43.78	53.09
polyp at pH7 6	18	18	46.09	61.97
coral polyp · control treatment	16	16	56.48	135.83
coral polyp · oil and dispersant treatment	16	16	77.12	224.23
coral polyp · oil treatment	16	16	43.75	65.83
coral polyp · dispersant treatment	16	16	69.69	245.82
Polyp	10	10	35.52	61.78

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.09
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.87
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.15
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.17
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.07
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.62
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.56
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.43
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.33
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.80
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.05
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.46
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.14
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.75
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.67
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.58
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.58
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.77
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.97
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.65
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.50
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.33
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.57
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.36
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.66
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.63
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.28
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.81
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.31
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.57
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.25
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.62
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.79
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.75
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.76
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.80
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	135.83
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.47
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.03
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.79
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.85
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.84
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.24
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.77
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.45
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.45
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.39
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.59
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.93
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.79
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.25
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.09
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	224.23
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	90.74
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	88.84
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	86.19
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.34
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.15
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	74.83
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.31
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.19
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.14
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.33
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.24
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.73
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.34
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.11
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.26
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.83
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.89
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.39
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.18
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.39
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.40
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.25
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.11
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.94
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.60
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.97
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.33
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.63
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.46
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.95
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.67
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	245.82
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	103.23
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	81.22
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.36
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.15
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	69.14
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.01
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.13
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.82
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.81
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.55
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.77
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.63
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.42
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.17
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.85
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	61.78
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	51.69
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	34.85
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	34.13
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	32.66
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	31.30
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	30.02
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	26.76
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	26.53
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	25.46

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.