Gene detail

Detailed information of OS493_023132-T1 in Lophelia pertusa

Genomic Location: scaffold_100:767694...769355
NR annotation: KAJ7371792.1, hypothetical protein OS493_023132 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008012 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01273 all species →	LBP_BPI_CETP	LBP / BPI / CETP family, N-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017942 all species →	Domain	Lipid-binding serum glycoprotein, N-terminal	Interproscan
IPR032942 all species →	Family	BPI/LBP/Plunc family	Interproscan
IPR017943 all species →	Homologous_superfamily	Bactericidal permeability-increasing protein, alpha/beta domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10504 all species →	BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008289 all species →	Molecular Function	lipid binding	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023132-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023132-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

22.7Max TPM

8.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	8.26	19.01
polyp at pH7 6	18	16	8.15	15.46
coral polyp · control treatment	16	16	10.74	22.74
coral polyp · oil and dispersant treatment	16	16	7.43	20.52
coral polyp · oil treatment	16	16	9.36	20.09
coral polyp · dispersant treatment	16	16	6.13	16.55
Polyp	10	9	6.35	13.48

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.01
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.77
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.12
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.92
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.69
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.23
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.05
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.80
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.65
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.31
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.20
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.96
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.94
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.21
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.16
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.85
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.88
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.46
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.45
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.37
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.94
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.68
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.88
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.61
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.56
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.84
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.72
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.09
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.06
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.36
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.11
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.38
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.16
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.74
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.78
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.84
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.63
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.42
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.37
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.28
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.49
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.79
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.43
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.22
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.71
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.53
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.34
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.18
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.02
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.52
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.56
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.06
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.00
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.25
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.13
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.29
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.29
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.92
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.08
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.89
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.26
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.18
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.98
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.80
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.70
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.09
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.72
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.48
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.03
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.56
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.29
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.28
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.77
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.17
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.04
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.20
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.20
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.15
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.17
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.95
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.71
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.55
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.80
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.19
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.87
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.98
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.28
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.57
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.09
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.09
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.51
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.42
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.10
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.07
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.02
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.89
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.58
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.48
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.38
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.76
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.61
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.48
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.41
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.90
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.23
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.24
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.