Gene detail

Detailed information of OS493_023159-T1 in Lophelia pertusa

Genomic Location: scaffold_100:1045588...1046076
NR annotation: KAJ7371818.1, hypothetical protein OS493_023159 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7RFT2	Cell division cycle protein 123 homolog OS=Nematostella vectensis OX=45351 GN=cdc123 PE=3 SV=1
Q2YDG3	Translation initiation factor eIF2 assembly protein OS=Bos taurus OX=9913 GN=CDC123 PE=2 SV=1
Q2PG37	Translation initiation factor eIF2 assembly protein OS=Macaca fascicularis OX=9541 GN=CDC123 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009010 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07065 all species →	D123	D123	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009772 all species →	Family	Cell division cycle protein 123	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15323 all species →	D123 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023159-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023159-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

45.1Max TPM

10.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.99	13.14
polyp at pH7 6	18	18	6.63	20.71
coral polyp · control treatment	16	16	10.21	24.88
coral polyp · oil and dispersant treatment	16	16	18.36	45.11
coral polyp · oil treatment	16	16	9.55	16.60
coral polyp · dispersant treatment	16	16	17.34	43.93
Polyp	10	10	8.42	21.32

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.14
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.47
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.39
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.55
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.29
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.65
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.61
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.38
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.99
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.68
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.39
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.75
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.73
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.32
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.07
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.98
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.79
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.57
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.71
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.47
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.41
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.60
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.90
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.69
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.49
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.77
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.74
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.38
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.24
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.55
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.03
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.38
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.06
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.44
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.48
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.88
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.84
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.42
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.15
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.06
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.41
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.36
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.10
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.91
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.01
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.59
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.49
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.76
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.68
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.02
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.70
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.11
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.71
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.73
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.07
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.23
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.44
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.60
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.94
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.28
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.97
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.03
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.34
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.28
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.62
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.34
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.12
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.60
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.05
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.15
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.90
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.72
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.19
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.83
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.96
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.14
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.90
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.84
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.39
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.81
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.25
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.95
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.09
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.93
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.20
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.46
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.85
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.07
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.96
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.98
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.93
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.46
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.15
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.14
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.19
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.87
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.62
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.33
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.36
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	21.32
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	15.06
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.71
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.64
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.09
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.59
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.20
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.99
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.06
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.57

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.