Gene detail

Detailed information of OS493_023165-T1 in Lophelia pertusa

Genomic Location: scaffold_100:1090985...1092501
NR annotation: KAJ7371824.1, hypothetical protein OS493_023165 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009444 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00300 all species →	His_Phos_1	Histidine phosphatase superfamily (branch 1)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029033 all species →	Homologous_superfamily	Histidine phosphatase superfamily	Interproscan
IPR013078 all species →	Family	Histidine phosphatase superfamily, clade-1	Interproscan
IPR050275 all species →	Family	Phosphoglycerate Mutase/Phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48100 all species →	BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016791 all species →	Molecular Function	phosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023165-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023165-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

14.8Max TPM

4.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.74	8.62
polyp at pH7 6	18	18	4.85	8.42
coral polyp · control treatment	16	16	5.29	12.17
coral polyp · oil and dispersant treatment	16	16	6.33	14.79
coral polyp · oil treatment	16	16	3.91	11.92
coral polyp · dispersant treatment	16	16	5.27	12.99
Polyp	10	8	2.48	6.95

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.62
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.86
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.56
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.46
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.25
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.04
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.10
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.96
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.04
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.96
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.68
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.67
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.63
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.57
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.46
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.43
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.73
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.23
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.42
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.43
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.24
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.22
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.13
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.41
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.38
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.27
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.28
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.77
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.76
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.71
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.68
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.26
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.02
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.68
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.53
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.18
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.17
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.96
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.68
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.38
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.94
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.36
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.50
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.02
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.07
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.55
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.99
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.94
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.82
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.54
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.58
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.07
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.79
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.11
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.59
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.46
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.62
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.73
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.58
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.48
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.15
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.95
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.61
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.40
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.30
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.16
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.78
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.61
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.92
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.84
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.44
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.40
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.40
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.64
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.69
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.99
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.67
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.63
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.90
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.83
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.73
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.27
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.20
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.03
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.99
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.45
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.95
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.02
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.01
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.65
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.25
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.13
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.95
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.64
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.84
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.73
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.17
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.02
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.18
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.37
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.95
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.46
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.62
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.39
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.56
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.33
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.97
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.55
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.