Gene detail

Detailed information of OS493_023188-T1 in Lophelia pertusa

Genomic Location: scaffold_100:1249486...1257585
NR annotation: KAJ7371845.1, hypothetical protein OS493_023188 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_023188-T1

ATGACAGAAGAAAATTCGCAGTTTCTAAATGAAACTGGTAGACTTTTGCTCACGACGTGGGCAAAGCGACAAAAGGACGTCTTTCAAAAGTATTTTACGGAAGGATTTCTTCTGTCTTTTCTTTCTGAACACGAACAAATGTCTGCGAGTTTTGTTGACTATCTGCGAATTTCACTTGACCTCGTGCAACATACCCCACAGATATTTTCGTTGTACACCGTTGTTCGTCATAGGGCTCATATCTGGGTCGAAAAGAATTTAAATACGGACTTCTGTGCGGCTGTGGCACGTCTTTTAATCGAGTATAACCATTGCTGGCCAGTTGGTGAAAATTTACTACAGTTCAACCTATCATTGATCAAAGCTTTGAGCAAAACTGAACTGCCTAAAACTTCCAAAGAGGAAATGAAGTCGTGCATCCAGAATGGTGCAGTCATTGGGGCTCTGCTGAATAAGATGTGGATGAAAAACCAAGCGCTACTCTTTCCGGTGTTAACTGAAATTTTTAACATTGTTTCCATGGTTGGCCGCAACCCTTCAGTAGCACTTGCCTCTGTCGTACAGTATTTCTCGACTGATATCATTGACTCTGCAACAAACCTTGTAGCCGCTAATCCTTCAGTGTCTGACGAGAGTCTGACTCTTTCCCTCGGTCGTATGATCAACTGGCTATCGTGGCCATGTGCGAAGAAAGTAGATCAATGGATTATTGGGTTTTTGAAGGCTTTGGCAAGTGCTCAGAAACATTCAATTCTCATCTCTGTGACACTTAAAGAAGTTGCCCAGGTTTTCAGTCGATTGTTATTCCCTGTAGTTCGTGACAGCACTATGGTTGTCCTGTCACATATGCTACTGAGCTTTCAACACTCTCCACAAGCATTCCATGAGATTGTTGAGCTCATCCCTGGCCTTGTGCAGAATTTAAAGAAGGAAAACAGCATATCCTCGCAGTCTACATTGCAAACCCTTGCTGAACTTGTGCACTGCCTCATGTATCAACACACAGGGTTTCCTGAGTTGTATGGACCAGTTCTTGATAGTTTACAGGATTTACCTAAACCTTCAGAAGTGATGATCAGGAAGTGGTTAGCTCAGAGTGCCTGGTCTGCTCGAGCTGTCAACATTCCACTCGCTGGCTTTACTCCGAAATCTGAGACTGGAAAAACCGGTTTAGTTAACTTGGGTAACACGTGTTATATGAACAGCGTGTTACAGGCACTATACATGCTTGAGGAGTTCCGTTACATGATATTTGGGCATCAAACGTACTCTCGTCAGCCACTGCTGCATCACTTACAGGAAGCGTTTGCCTTTCTTGCTTTAACACAGAGGTCAGCCTTTGCGCCTTCAAAATTCCTTCAGGTGGCTAGACCTCCATGGTTTGCCCCAGGCACTCAGCAAGATTGCTCAGAATTCCTCAAGTTCCTTCTTGACAGGATCAGCGAAGAAGACAAAGCCCTTAACAATAGCAACGACGATGAATCACCAAAAACCTCGCTGGTAGATGACACCTTTGCTGGCAAGTTGCTGGTGTGCCTGTGCTGTCGTAGATGTAATAACAGCTCTTGTAGGGAGGAAGTGTTCACAGACTTACCACTGGCATTCCCACAGGCCGGGGAACTAGAAGGTCGGGTAGTACCTGCAGAGCAAGATTTGTCATCAGATAAACAACCAGTTGAACACGATGAAATGACTGCTAATTCTACTGTAAGCTCAGATAGAAGTCTCAAAGGGGGTGACATCACTAATAACATGTCTGCATCTGGCTTAACACCGAAGCCTGTCGAAGACGCCATGTCTGCAGCTTCATCACATAGCGCTGCCTCAGCGGAGAACTCAATGTCTTTTACAACTGGGACAAGTCTACCGACAAAGTTTCGCGAGTCAGGCTTAAGGGCCGACGCCCCAGACATATCCATCACAGAGTTACTAGAGTATTTTTTTGAACCTGAAATTCTGGAAGGATCCAATCAATACCATTGTGAGCAGTGCCACAGTTTACAGGATGCAGAGCGCACCGTCGCCATTTCCAAGGCATCAGACTTCCTTGTCTTAACATTGAAGAGGTTTGCTTATAATGTGCGGACGCAGCAGAGGTCTAAAATATTACAGAGTGTATCGTACCCTCTTGTTTTGAAGATGCCACATGTTCACCTGAAAGGAAGGGAGTGGCAAAAGGAAGGTCAAGAGTGTGTCCCAGATGTTATTGGCGATAAAAATGAAGACATTATCAACCAGTCGTGTTTTAAATCCAAACGAACGAAACAAGAAGATGAAAGCATGACAGACGGTGTATCCACTTGTGAGGAGAAACCCACTTCTGATATCGTGTACTCCCTGTGTTCAGTAATCGTTCATTCTGGGACGTCATCGGAAAGTGGACATTACTACTGTTATGCGCGTTCCTCTGCGCATCTGATTGGAGGAGGAGAAAGTGACCAGGGTCGAGTTCGAGAGCAAGTGATCATGACACATGGTTTCTCTTTAATGACAGTCGTGTGTCTTACTCGGCGTTCAGCACCTTTGCTGATGTGTCCAGACGTTTTCCCAAGGACACTCCATATGTGTTGA

Transcript

OS493_023188-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NB14	Ubiquitin carboxyl-terminal hydrolase 38 OS=Homo sapiens OX=9606 GN=USP38 PE=1 SV=2
Q8BW70	Ubiquitin carboxyl-terminal hydrolase 38 OS=Mus musculus OX=10090 GN=Usp38 PE=1 SV=2
Q9P2H5	Ubiquitin carboxyl-terminal hydrolase 35 OS=Homo sapiens OX=9606 GN=USP35 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007708 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21246 all species →	Usp38-like_N	Ubiquitin carboxyl-terminal hydrolase 38-like, N-terminal domain	Domain	Interproscan
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018200 all species →	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan
IPR050164 all species →	Family	Ubiquitin carboxyl-terminal hydrolases	Interproscan
IPR049407 all species →	Domain	Ubiquitin carboxyl-terminal hydrolase 38-like, N-terminal domain	Interproscan
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24006 all species →	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11854	USP35_38; ubiquitin carboxyl-terminal hydrolase 35/38	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_023188-T1 global co-expression network