Gene detail

Detailed information of OS493_023223-T1 in Lophelia pertusa

Genomic Location: scaffold_101:512587...532912
NR annotation: KAJ7357749.1, hypothetical protein OS493_023223 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7D513	Hercynine oxygenase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=egtB PE=2 SV=1
O69671	Hercynine oxygenase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=egtB PE=1 SV=1
A0R5N0	Hercynine oxygenase OS=Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) OX=246196 GN=egtB PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002544 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03781 all species →	FGE-sulfatase	Sulfatase-modifying factor enzyme 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051043 all species →	Family	Sulfatase Modifying Factor and Kinase	Interproscan
IPR005532 all species →	Domain	Sulfatase-modifying factor enzyme	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR042095 all species →	Homologous_superfamily	Sulfatase-modifying factor enzyme superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23150 all species →	SULFATASE MODIFYING FACTOR 1, 2	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_023223-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023223-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023223-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

709.1Max TPM

143.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	77.54	164.91
polyp at pH7 6	18	18	81.12	127.97
coral polyp · control treatment	16	16	171.48	333.20
coral polyp · oil and dispersant treatment	16	16	252.50	709.11
coral polyp · oil treatment	16	16	193.34	614.02
coral polyp · dispersant treatment	16	16	154.54	458.53
Polyp	10	10	58.27	173.25

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	164.91
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	148.23
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	115.93
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	111.97
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	103.50
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	99.40
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	76.34
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.29
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	72.84
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	70.63
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.74
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	61.85
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.66
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.77
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.38
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.36
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.75
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.24
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	127.97
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	121.86
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	121.65
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	120.06
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	95.96
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	95.02
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	87.30
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	83.59
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	78.70
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	77.37
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	74.40
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.21
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.53
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.50
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.75
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.76
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.36
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.18
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	333.20
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	283.52
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	263.28
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	263.04
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	188.89
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	180.66
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	156.65
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	148.65
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	122.79
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	122.55
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	121.16
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	119.22
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	118.24
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	115.08
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	108.99
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	97.76
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	709.11
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	342.50
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	312.22
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	293.21
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	292.59
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	290.19
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	254.01
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	246.78
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	238.14
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	232.74
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	194.89
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	181.10
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	140.80
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	124.64
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	109.92
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	77.09
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	614.02
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	391.60
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	282.24
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	247.44
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	221.71
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	217.53
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	194.70
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	188.01
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	168.92
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	118.63
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	107.51
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	81.29
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	78.06
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	76.47
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	70.46
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.78
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	458.53
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	305.11
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	274.84
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	240.58
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	146.31
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	140.16
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	139.84
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	125.88
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	120.14
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	113.07
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	110.55
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	91.15
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	77.70
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	74.25
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.89
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.66
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	173.25
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	81.08
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	77.03
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	60.62
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	41.72
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	35.78
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	31.03
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	30.07
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	29.35
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	22.74

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.