Gene detail

Detailed information of OS493_023226-T1 in Lophelia pertusa

Genomic Location: scaffold_101:557754...558077
NR annotation: KAJ7357752.1, hypothetical protein OS493_023226 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZL21	Cyanocobalamin reductase / alkylcobalamin dealkylase OS=Gallus gallus OX=9031 GN=MMACHC PE=2 SV=1
Q9Y4U1	Cyanocobalamin reductase / alkylcobalamin dealkylase OS=Homo sapiens OX=9606 GN=MMACHC PE=1 SV=3
Q5E9C8	Cyanocobalamin reductase / alkylcobalamin dealkylase OS=Bos taurus OX=9913 GN=MMACHC PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007498 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16690 all species →	MMACHC	Methylmalonic aciduria and homocystinuria type C family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032037 all species →	Family	Methylmalonic aciduria and homocystinuria type C family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31457 all species →	METHYLMALONIC ACIDURIA AND HOMOCYSTINURIA TYPE C PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0009235 all species →	Biological Process	cobalamin metabolic process	Interproscan
GO:0032451 all species →	Molecular Function	demethylase activity	Interproscan
GO:0033787 all species →	Molecular Function	cyanocobalamin reductase (cyanide-eliminating) (NADP+) activity	Interproscan
GO:0071949 all species →	Molecular Function	FAD binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023226-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023226-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

20.6Max TPM

8.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.97	15.36
polyp at pH7 6	18	16	9.54	15.27
coral polyp · control treatment	16	16	10.98	18.82
coral polyp · oil and dispersant treatment	16	15	5.08	11.96
coral polyp · oil treatment	16	16	10.01	20.55
coral polyp · dispersant treatment	16	16	6.35	15.14
Polyp	10	9	5.64	10.70

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.36
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.73
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.23
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.53
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.34
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.22
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.65
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.57
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.41
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.64
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.34
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.05
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.73
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.38
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.83
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.61
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.49
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.29
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.27
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.56
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.74
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.08
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.76
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.49
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.68
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.62
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.25
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.35
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.35
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.58
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.07
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.37
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.41
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.20
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.82
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.29
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.33
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.70
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.89
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.67
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.46
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.31
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.28
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.25
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.37
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.37
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.05
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.99
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.41
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.52
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.96
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.01
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.63
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.26
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.91
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.84
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.09
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.69
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.44
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.97
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.62
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.43
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.88
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.63
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.90
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.55
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.75
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.84
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.73
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.34
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.26
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.14
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.66
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.26
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.06
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.13
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.76
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.28
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.09
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.91
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.45
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.14
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.02
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.19
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.97
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.75
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.91
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.91
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.74
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.39
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.99
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.86
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.24
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.13
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.74
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.63
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.94
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.70
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.54
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.45
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.27
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.99
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.36
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.91
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.36
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.79
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.