Gene detail

Detailed information of OS493_023238-T1 in Lophelia pertusa

Genomic Location: scaffold_101:703586...705412
NR annotation: KAJ7357763.1, 60S ribosomal protein L37 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9VXX8	Large ribosomal subunit protein eL37A OS=Drosophila melanogaster OX=7227 GN=RpL37-1 PE=1 SV=1
P79244	Large ribosomal subunit protein eL37 OS=Bos taurus OX=9913 GN=RPL37 PE=3 SV=4
P61927	Large ribosomal subunit protein eL37 OS=Homo sapiens OX=9606 GN=RPL37 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011041 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01907 all species →	Ribosomal_L37e	Ribosomal protein L37e	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011332 all species →	Homologous_superfamily	Zinc-binding ribosomal protein	Interproscan
IPR011331 all species →	Homologous_superfamily	Large ribosomal subunit protein eL37/eL43	Interproscan
IPR001569 all species →	Family	Large ribosomal subunit protein eL37	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10768 all species →	60S RIBOSOMAL PROTEIN L37	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023238-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023238-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

8,044.8Max TPM

3,248.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3,521.49	4,394.71
polyp at pH7 6	18	18	3,364.05	3,916.87
coral polyp · control treatment	16	16	2,938.71	4,999.23
coral polyp · oil and dispersant treatment	16	16	2,715.72	4,152.97
coral polyp · oil treatment	16	16	3,482.86	6,420.64
coral polyp · dispersant treatment	16	16	2,696.72	8,044.75
Polyp	10	10	4,401.76	5,748.50

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4,394.71
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4,330.83
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4,302.55
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4,298.46
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,661.87
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,659.17
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,542.52
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,534.57
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,397.38
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,354.13
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,329.28
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,167.11
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,138.46
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,129.72
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,105.24
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,096.21
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2,975.58
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2,968.98
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,916.87
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,896.38
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,852.48
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,834.41
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,795.19
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,788.81
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,717.71
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,685.31
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,469.26
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,455.83
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,438.86
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,429.65
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,063.88
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,044.02
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,024.28
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,010.50
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2,088.94
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2,040.43
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4,999.23
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,934.60
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,751.02
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,632.57
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,493.03
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,463.39
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,227.88
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,851.86
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,605.26
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,499.47
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,470.02
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,415.09
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,141.99
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,134.22
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,789.84
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,609.82
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4,152.97
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,623.57
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,528.77
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,294.76
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,943.66
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,901.11
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,798.93
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,747.79
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,645.81
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,490.00
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,474.74
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,313.85
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,044.79
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,904.73
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,834.63
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,751.46
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6,420.64
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6,143.43
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4,216.57
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,572.96
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,528.19
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,475.23
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,398.18
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,328.39
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,138.50
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,004.13
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2,944.03
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2,870.62
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2,721.75
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2,470.32
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2,444.62
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2,048.21
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8,044.75
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6,182.60
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,962.76
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,927.86
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,475.94
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,306.81
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,252.27
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,019.55
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,005.50
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,950.09
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,942.71
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,936.91
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,667.29
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,638.51
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,527.09
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,306.83
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5,748.50
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5,000.49
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4,926.42
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4,900.66
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4,483.32
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4,103.11
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4,068.41
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3,778.55
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3,566.08
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3,442.04

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.