Gene detail

Detailed information of OS493_023267-T1 in Lophelia pertusa

Genomic Location: scaffold_101:943965...947268
NR annotation: KAJ7357789.1, hypothetical protein OS493_023267 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P42556	Pteridine reductase 1 OS=Leishmania tarentolae OX=5689 GN=PTR1 PE=1 SV=1
Q01782	Pteridine reductase 1 OS=Leishmania major OX=5664 GN=PTR1 PE=1 SV=2
P39482	Glucose 1-dehydrogenase 1 OS=Priestia megaterium OX=1404 GN=gdhI PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008523 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13561 all species →	adh_short_C2	Enoyl-(Acyl carrier protein) reductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR002347 all species →	Family	Short-chain dehydrogenase/reductase SDR	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43639 all species →	OXIDOREDUCTASE, SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY (AFU_ORTHOLOGUE AFUA_5G02870)	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_023267-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023267-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023267-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

100TPM > 0

7Conditions

14.3Max TPM

3.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	3.37	6.07
polyp at pH7 6	18	17	2.72	7.02
coral polyp · control treatment	16	16	3.36	8.33
coral polyp · oil and dispersant treatment	16	15	2.46	6.18
coral polyp · oil treatment	16	15	5.57	14.34
coral polyp · dispersant treatment	16	13	1.68	4.40
Polyp	10	7	2.04	10.30

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.07
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.02
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.87
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.53
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.46
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.67
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.62
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.61
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.41
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.11
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.94
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.86
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.77
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.53
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.13
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.91
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.18
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.02
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.08
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.01
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.86
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.34
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.21
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.87
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.87
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.53
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.47
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.38
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.30
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.91
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.80
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.45
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.95
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.92
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.33
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.92
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.15
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.08
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.16
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.63
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.57
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.52
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.28
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.69
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.17
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.09
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.79
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.28
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.85
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.27
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.18
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.04
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.05
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.06
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.90
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.54
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.29
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.10
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.09
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.02
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.94
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.01
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.87
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.21
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.13
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.34
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.68
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.74
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.53
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.49
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.67
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.64
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.03
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.83
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.05
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.56
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.19
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.00
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.98
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.36
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.40
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.54
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.35
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.15
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.34
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.33
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.99
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.70
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.23
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.11
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.10
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.45
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.23
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.30
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.94
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.53
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.52
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.86
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.83
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.39
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.