Gene detail

Detailed information of OS493_023268-T1 in Lophelia pertusa

Genomic Location: scaffold_101:947283...950115
NR annotation: KAJ7357790.1, hypothetical protein OS493_023268 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P72736	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=folK PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008523 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01288 all species →	HPPK	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000550 all species →	Domain	7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK	Interproscan
IPR035907 all species →	Homologous_superfamily	7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43071 all species →	2-AMINO-4-HYDROXY-6-HYDROXYMETHYLDIHYDROPTERIDINE PYROPHOSPHOKINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003848 all species →	Molecular Function	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity	Interproscan
GO:0009396 all species →	Biological Process	folic acid-containing compound biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023268-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023268-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

90TPM > 0

7Conditions

9.7Max TPM

2.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	15	4.02	9.37
polyp at pH7 6	18	13	2.05	8.24
coral polyp · control treatment	16	14	2.19	4.79
coral polyp · oil and dispersant treatment	16	15	3.28	9.42
coral polyp · oil treatment	16	15	4.18	9.70
coral polyp · dispersant treatment	16	12	1.44	3.57
Polyp	10	6	1.74	7.77

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.37
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.13
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.95
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.46
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.03
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.24
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.79
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.33
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.69
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.51
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.16
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.09
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.03
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.84
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.76
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.24
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.60
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.58
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.97
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.62
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.58
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.41
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.31
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.16
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.88
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.66
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.42
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.41
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.79
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.60
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.53
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.77
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.91
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.85
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.60
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.32
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.98
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.45
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.20
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.77
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.22
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.42
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.70
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.81
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.25
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.83
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.60
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.13
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.54
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.49
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.37
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.02
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.35
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.26
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.86
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.84
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.70
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.22
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.66
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.62
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.02
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.44
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.42
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.14
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.85
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.36
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.13
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.80
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.12
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.11
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.34
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.57
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.29
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.92
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.68
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.01
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.91
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.85
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.74
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.35
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.93
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.49
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.30
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.77
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.27
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.71
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.85
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.58
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.18
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.