Gene detail

Detailed information of OS493_023269-T1 in Lophelia pertusa

Genomic Location: scaffold_101:950200...953257
NR annotation: KAJ7357791.1, hypothetical protein OS493_023269 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0AC21	Dihydroneopterin triphosphate 2'-epimerase OS=Escherichia coli O157:H7 OX=83334 GN=folX PE=3 SV=2
P0AC20	Dihydroneopterin triphosphate 2'-epimerase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=folX PE=3 SV=2
P0AC19	Dihydroneopterin triphosphate 2'-epimerase OS=Escherichia coli (strain K12) OX=83333 GN=folX PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008523 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02152 all species →	FolB	Dihydroneopterin aldolase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043133 all species →	Homologous_superfamily	GTP cyclohydrolase I, C-terminal/NADPH-dependent 7-cyano-7-deazaguanine reductase	Interproscan
IPR006156 all species →	Family	Dihydroneopterin aldolase	Interproscan
IPR006157 all species →	Domain	Dihydroneopterin aldolase/epimerase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42844 all species →	DIHYDRONEOPTERIN ALDOLASE 1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004150 all species →	Molecular Function	dihydroneopterin aldolase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006760 all species →	Biological Process	folic acid-containing compound metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023269-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023269-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

82TPM > 0

7Conditions

7.2Max TPM

1.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	10	1.03	3.87
polyp at pH7 6	18	12	0.90	2.59
coral polyp · control treatment	16	14	1.42	4.16
coral polyp · oil and dispersant treatment	16	12	1.40	4.46
coral polyp · oil treatment	16	16	2.40	7.23
coral polyp · dispersant treatment	16	11	0.69	2.02
Polyp	10	7	0.87	5.69

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.87
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.34
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.18
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.18
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.94
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.79
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.56
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.20
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.80
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.75
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.59
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.32
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.79
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.68
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.56
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.40
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.39
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.14
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.87
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.59
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.47
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.45
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.16
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.10
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.74
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.36
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.30
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.37
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.27
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.06
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.04
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.75
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.71
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.66
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.65
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.47
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.46
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.36
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.80
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.30
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.85
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.55
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.48
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.33
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.05
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.05
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.03
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.12
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.23
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.85
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.89
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.57
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.47
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.14
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.68
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.66
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.51
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.47
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.18
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.13
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.07
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.61
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.52
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.47
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.02
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.91
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.62
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.53
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.27
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.67
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.66
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.63
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.40
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.28
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.10
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.69
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.47
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.80
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.38
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.20
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.16
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.02
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.