Gene detail

Detailed information of OS493_023307-T1 in Lophelia pertusa

Genomic Location: scaffold_102:584596...627676
NR annotation: KAJ7329015.1, DNA methyltransferase 1-associated protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JI44	DNA methyltransferase 1-associated protein 1 OS=Mus musculus OX=10090 GN=Dmap1 PE=1 SV=1
Q9NPF5	DNA methyltransferase 1-associated protein 1 OS=Homo sapiens OX=9606 GN=DMAP1 PE=1 SV=1
Q7K3D8	DNA methyltransferase 1-associated protein 1 OS=Drosophila melanogaster OX=7227 GN=DMAP1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005145 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05499 all species →	DMAP1	DNA methyltransferase 1-associated protein 1 (DMAP1)	Family	Interproscan
PF16282 all species →	SANT_DAMP1_like	SANT/Myb-like domain of DAMP1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008468 all species →	Domain	DNA methyltransferase 1-associated 1	Interproscan
IPR032563 all species →	Domain	DAMP1, SANT/Myb-like domain	Interproscan
IPR027109 all species →	Family	SWR1-complex protein 4/DNA methyltransferase 1-associated protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12855 all species →	DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000812 all species →	Cellular Component	Swr1 complex	Interproscan
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0004402 all species →	Molecular Function	histone acetyltransferase activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0035267 all species →	Cellular Component	NuA4 histone acetyltransferase complex	Interproscan
GO:0043486 all species →	Biological Process	obsolete histone exchange	Interproscan
GO:0043967 all species →	Biological Process	obsolete histone H4 acetylation	Interproscan
GO:0043968 all species →	Biological Process	obsolete histone H2A acetylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11324	DMAP1, SWC4, EAF2; DNA methyltransferase 1-associated protein 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023307-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

99.9Max TPM

46.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	52.39	64.21
polyp at pH7 6	18	18	53.92	79.38
coral polyp · control treatment	16	16	44.51	83.99
coral polyp · oil and dispersant treatment	16	16	35.68	72.44
coral polyp · oil treatment	16	16	42.95	53.12
coral polyp · dispersant treatment	16	16	34.88	75.20
Polyp	10	10	65.09	99.94

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.21
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	61.31
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	58.30
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.82
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.53
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.88
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.92
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.70
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.58
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.43
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.95
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.59
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.38
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.22
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.75
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.20
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.69
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.49
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	79.38
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.44
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.96
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.58
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.39
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.74
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.49
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.26
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.61
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.93
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.70
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.56
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.83
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.13
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.65
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.57
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.33
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.98
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	83.99
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.21
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.76
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.51
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.44
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.35
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.09
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.80
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.19
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.35
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.27
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.85
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.41
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.60
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.14
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.27
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	72.44
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.28
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.70
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.90
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.82
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.65
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.02
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.08
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.87
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.11
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.57
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.41
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.21
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.46
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.15
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.15
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.12
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.16
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.69
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.22
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.26
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.21
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.80
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.60
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.95
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.81
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.94
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.46
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.40
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.94
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.87
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.74
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	75.20
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.44
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.17
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.92
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.04
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.69
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.91
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.68
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.66
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.27
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.14
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.33
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.45
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.67
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.29
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.31
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	99.94
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	77.70
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	74.32
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	72.73
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	71.64
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	61.69
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	58.18
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	56.29
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	41.53
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	36.90

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.