Gene detail

Detailed information of OS493_023338-T1 in Lophelia pertusa

Genomic Location: scaffold_103:67260...78517
NR annotation: KAJ7390629.1, cell redox homeostasis [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9T042	Protein disulfide-isomerase 5-4 OS=Arabidopsis thaliana OX=3702 GN=PDIL5-4 PE=2 SV=1
Q69SA9	Protein disulfide isomerase-like 5-4 OS=Oryza sativa subsp. japonica OX=39947 GN=PDIL5-4 PE=2 SV=1
Q9LJU2	Protein disulfide-isomerase 5-3 OS=Arabidopsis thaliana OX=3702 GN=PDIL5-3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004544 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13848 all species →	Thioredoxin_6	Thioredoxin-like domain	Domain	Interproscan
PF00085 all species →	Thioredoxin	Thioredoxin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR040090 all species →	Family	Thioredoxin domain-containing protein 16	Interproscan
IPR013766 all species →	Domain	Thioredoxin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22699 all species →	THIOREDOXIN DOMAIN-CONTAINING PROTEIN 16	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_023338-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023338-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023338-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

57.5Max TPM

27.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	21.99	26.94
polyp at pH7 6	18	18	24.01	31.17
coral polyp · control treatment	16	16	34.21	57.48
coral polyp · oil and dispersant treatment	16	16	33.62	45.13
coral polyp · oil treatment	16	16	32.58	48.47
coral polyp · dispersant treatment	16	16	24.04	47.94
Polyp	10	10	16.97	24.63

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.94
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.99
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.11
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.69
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.31
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.19
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.36
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.33
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.83
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.54
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.29
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.94
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.50
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.33
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.15
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.92
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.84
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.50
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.17
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.93
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.76
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.49
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.82
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.47
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.46
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.26
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.11
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.06
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.17
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.68
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.39
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.94
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.85
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.60
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.02
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.05
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.48
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.42
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.51
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.78
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.54
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.80
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.66
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.80
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.06
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.83
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.82
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.43
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.39
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.98
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.71
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.13
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.13
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.92
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.20
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.73
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.67
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.41
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.69
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.45
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.04
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.20
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.63
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.92
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.88
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.36
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.31
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.33
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.47
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.35
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.22
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.52
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.01
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.95
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.94
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.36
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.23
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.97
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.41
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.07
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.58
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.61
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.21
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.36
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.94
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.78
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.51
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.70
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.02
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.86
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.32
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.55
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.18
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.17
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.96
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.43
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.03
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.00
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.36
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.78
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	24.63
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	22.28
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	18.33
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	17.68
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	17.35
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	16.80
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	16.54
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	16.53
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.45
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.11

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.