Gene detail

Detailed information of OS493_023339-T1 in Lophelia pertusa

Genomic Location: scaffold_103:80571...87277
NR annotation: KAJ7390630.1, hypothetical protein OS493_023339 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004544 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_023339-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR040090 all species →	Family	Thioredoxin domain-containing protein 16	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22699 all species →	THIOREDOXIN DOMAIN-CONTAINING PROTEIN 16	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_023339-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023339-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023339-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

32.0Max TPM

10.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.33	12.80
polyp at pH7 6	18	17	8.65	15.95
coral polyp · control treatment	16	16	14.03	26.62
coral polyp · oil and dispersant treatment	16	16	14.97	28.82
coral polyp · oil treatment	16	16	12.81	20.28
coral polyp · dispersant treatment	16	16	12.58	31.96
Polyp	10	9	4.48	10.75

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.80
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.75
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.69
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.89
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.90
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.61
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.94
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.84
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.68
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.57
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.52
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.48
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.08
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.99
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.98
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.57
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.30
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.31
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.95
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.76
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.50
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.59
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.58
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.36
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.75
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.55
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.28
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.70
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.02
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.58
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.45
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.68
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.61
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.21
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.09
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.62
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.03
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.31
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.31
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.53
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.42
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.38
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.71
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.70
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.91
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.69
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.87
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.47
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.55
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.82
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.68
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.96
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.05
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.37
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.46
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.55
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.54
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.81
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.30
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.99
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.41
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.24
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.50
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.93
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.28
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.73
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.51
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.54
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.13
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.69
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.75
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.11
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.39
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.03
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.02
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.29
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.01
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.99
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.42
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.96
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.10
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.72
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.83
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.74
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.49
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.36
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.13
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.02
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.82
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.50
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.14
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.15
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.34
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.93
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.13
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.75
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.45
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.78
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.52
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.08
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.08
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.53
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.67
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.96
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.