Gene detail

Detailed information of OS493_023391-T1 in Lophelia pertusa

Genomic Location: scaffold_103:924473...935007
NR annotation: KAJ7390679.1, Sodium/potassium-transporting ATPase subunit alpha-1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P13607	Sodium/potassium-transporting ATPase subunit alpha OS=Drosophila melanogaster OX=7227 GN=Atpalpha PE=1 SV=3
P28774	Sodium/potassium-transporting ATPase subunit alpha-B OS=Artemia franciscana OX=6661 PE=2 SV=1
A2VDL6	Sodium/potassium-transporting ATPase subunit alpha-2 OS=Bos taurus OX=9913 GN=ATP1A2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001577 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08282 all species →	Hydrolase_3	haloacid dehalogenase-like hydrolase	Domain	Interproscan
PF00689 all species →	Cation_ATPase_C	Cation transporting ATPase, C-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050510 all species →	Family	Cation transport ATPase (P-type)	Interproscan
IPR023298 all species →	Homologous_superfamily	P-type ATPase, transmembrane domain superfamily	Interproscan
IPR001757 all species →	Family	P-type ATPase	Interproscan
IPR006068 all species →	Domain	Cation-transporting P-type ATPase, C-terminal	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43294 all species →	SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005391 all species →	Molecular Function	P-type sodium:potassium-exchanging transporter activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006883 all species →	Biological Process	intracellular sodium ion homeostasis	Interproscan
GO:0019829 all species →	Molecular Function	ATPase-coupled monoatomic cation transmembrane transporter activity	Interproscan
GO:0030007 all species →	Biological Process	intracellular potassium ion homeostasis	Interproscan
GO:0036376 all species →	Biological Process	sodium ion export across plasma membrane	Interproscan
GO:1902600 all species →	Biological Process	proton transmembrane transport	Interproscan
GO:1990573 all species →	Biological Process	potassium ion import across plasma membrane	Interproscan
GO:0005215 all species →	Molecular Function	transporter activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023391-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023391-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

196.3Max TPM

55.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	49.64	73.41
polyp at pH7 6	18	18	56.15	110.75
coral polyp · control treatment	16	16	69.54	121.36
coral polyp · oil and dispersant treatment	16	16	52.52	94.91
coral polyp · oil treatment	16	16	57.28	139.15
coral polyp · dispersant treatment	16	16	62.91	196.32
Polyp	10	10	30.66	65.39

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	73.41
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	70.10
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	65.34
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.98
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.76
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.95
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.71
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.46
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.07
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.25
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.27
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.17
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.89
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.51
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.96
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.60
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.18
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.86
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	110.75
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	102.05
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	86.35
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.06
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	71.91
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	70.21
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.41
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.91
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.92
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.19
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.60
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.51
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.30
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.93
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.30
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.24
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.83
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.15
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	121.36
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	98.11
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	91.06
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	90.27
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	86.85
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	84.57
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.41
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.22
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.26
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.91
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.12
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.62
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.21
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.50
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.13
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.08
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	94.91
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	94.45
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	75.65
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.77
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.98
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.57
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.41
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.31
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.72
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.75
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.15
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.76
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.55
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.45
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.92
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	139.15
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	90.42
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	88.96
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.03
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.37
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.97
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.67
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.01
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.74
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.56
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.26
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.53
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.59
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.42
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.59
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.24
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	196.32
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	141.96
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	92.05
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.14
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.04
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.09
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.25
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.45
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.58
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.54
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.64
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.30
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.96
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.24
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.56
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.52
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	65.39
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	54.82
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	38.91
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	30.58
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	26.49
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	25.96
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	24.27
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	17.69
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	16.23
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.26

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.