Gene detail

Detailed information of OS493_023426-T1 in Lophelia pertusa

Genomic Location: scaffold_104:133371...136861
NR annotation: KAJ7384102.1, hypothetical protein OS493_023426 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004265 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_023426-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR029676 all species →	Family	Cilia- and flagella-associated protein 221	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46500 all species →	CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 221	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003341 all species →	Biological Process	cilium movement	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0044458 all species →	Biological Process	motile cilium assembly	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0097729 all species →	Cellular Component	9+2 motile cilium	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_023426-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_023426-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

42.0Max TPM

11.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.28	17.37
polyp at pH7 6	18	18	11.01	19.42
coral polyp · control treatment	16	16	13.82	39.09
coral polyp · oil and dispersant treatment	16	16	10.04	42.00
coral polyp · oil treatment	16	16	11.71	20.95
coral polyp · dispersant treatment	16	16	8.22	15.46
Polyp	10	10	15.89	34.73

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.37
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.32
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.06
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.77
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.35
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.08
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.01
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.49
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.04
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.76
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.32
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.48
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.49
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.75
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.68
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.54
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.69
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.87
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.42
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.29
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.52
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.53
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.75
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.59
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.35
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.14
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.72
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.43
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.93
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.10
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.61
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.56
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.18
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.35
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.11
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.56
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.09
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.02
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.43
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.95
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.89
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.03
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.17
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.25
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.14
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.58
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.00
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.27
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.21
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.96
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.12
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.99
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.00
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.31
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.16
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.91
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.45
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.98
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.92
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.70
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.48
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.44
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.36
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.04
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.03
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.37
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.34
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.17
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.95
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.44
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.15
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.88
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.36
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.93
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.85
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.80
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.20
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.80
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.27
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.45
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.13
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.23
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.06
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.89
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.46
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.36
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.95
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.19
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.93
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.58
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.82
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.95
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.43
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.89
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.42
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.22
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.06
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.45
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.08
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.72
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	34.73
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	22.70
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	20.42
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	20.39
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	12.74
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.34
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	12.20
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.34
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.82
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.24

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.