Detailed information of OS493_023458-T1 in Lophelia pertusa

Genomic Location: scaffold_104:478770...485061
NR annotation: KAJ7384131.1, 2-hydroxyacyl-CoA lyase 1 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9QXE02-hydroxyacyl-CoA lyase 1 OS=Mus musculus OX=10090 GN=Hacl1 PE=1 SV=2
Q8CHM72-hydroxyacyl-CoA lyase 1 OS=Rattus norvegicus OX=10116 GN=Hacl1 PE=1 SV=1
Q9UJ832-hydroxyacyl-CoA lyase 1 OS=Homo sapiens OX=9606 GN=HACL1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003527 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00205
all species →		TPP_enzyme_MThiamine pyrophosphate enzyme, central domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR045025
all species →		FamilyTPP-binding domain containing protein HACL1-likeInterproscan
IPR012000
all species →		DomainThiamine pyrophosphate enzyme, central domainInterproscan
IPR029061
all species →		Homologous_superfamilyThiamin diphosphate-binding foldInterproscan
IPR029035
all species →		Homologous_superfamilyDHS-like NAD/FAD-binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43710
all species →		2-HYDROXYACYL-COA LYASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0001561
all species →		Biological Processfatty acid alpha-oxidationInterproscan
GO:0005777
all species →		Cellular ComponentperoxisomeInterproscan
GO:0030976
all species →		Molecular Functionthiamine pyrophosphate bindingInterproscan
GO:0000287
all species →		Molecular Functionmagnesium ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_023458-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_023458-T1 global co-expression network
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